RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ZNF117Q03924 483 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 TMEM176BQ3YBM2 270 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-213ENST00000492506 PYDC2Q56P42 97 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 EXOSC6Q5RKV6 272 aaKnown RBP11.5□□□□□ -0.57
HDAC3-213ENST00000492506 CBLN3Q6UW01 205 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 CFAP77Q6ZQR2 320 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 HSD17B13Q7Z5P4 300 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-213ENST00000492506 MISPQ8IVT2 679 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 ENTHD1Q8IYW4 607 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 PIAS4Q8N2W9 510 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-213ENST00000492506 SLC43A2Q8N370 569 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 ZNF433Q8N7K0 673 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-213ENST00000492506 SLC16A11Q8NCK7 471 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 CDC26Q8NHZ8 85 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 KCNS3Q9BQ31 491 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 PRR14Q9BWN1 585 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 REEP1Q9H902 201 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 CHODLQ9H9P2 273 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 TNFRSF12AQ9NP84 129 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 UBQLN4Q9NRR5 601 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 NTMQ9P121 344 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 COPZ2Q9P299 210 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 KCNS2Q9ULS6 477 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 ICAM5Q9UMF0 924 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 MGAM2Q2M2H8 2515 aa11.5□□□□□ -0.57
HDAC3-213ENST00000492506 A0A0B4J293 547 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 A0A1W2PPL8 197 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 C7orf66A4D0T2 115 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 OR6C65A6NJZ3 312 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 HNRNPCL2B2RXH8 293 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 C9JVG2 144 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 LYRM1O43325 122 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SLC2A2P11168 524 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-213ENST00000492506 PTAFRP25105 342 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 CD40P25942 277 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 LCN1P31025 176 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 TGFBR1P36897 503 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 RAB13P51153 203 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 DAPP51397 102 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 FOXA1P55317 472 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 RAC3P60763 192 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SNRPD2P62316 118 aaKnown RBP11.49□□□□□ -0.57
HDAC3-213ENST00000492506 HSPB3Q12988 150 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 TOMM34Q15785 309 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-213ENST00000492506 DUSP5Q16690 384 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 OR4F3Q6IEY1 312 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 FAM166AQ6J272 317 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 MZT2AQ6P582 158 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SLC22A25Q6T423 547 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 TMEM108Q6UXF1 575 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 CYP4Z1Q86W10 505 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 CALHM3Q86XJ0 350 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 FBXL14Q8N1E6 418 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 DTX3Q8N9I9 347 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 CDRT4Q8N9R6 151 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 ATG16L2Q8NAA4 619 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 GGHQ92820 318 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SLC25A46Q96AG3 418 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SGK3Q96BR1 496 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 ZNF775Q96BV0 537 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-213ENST00000492506 MTERF3Q96E29 417 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 C1orf159Q96HA4 380 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 MGLLQ99685 303 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 PLA2G12AQ9BZM1 189 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 BIN3Q9NQY0 253 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 ASIC5Q9NY37 505 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 KLHL9Q9P2J3 617 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 MGAT4AQ9UM21 535 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 MGAT4BQ9UQ53 548 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 POFUT2Q9Y2G5 429 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 POLR3HQ9Y535 204 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-213ENST00000492506 SLC25A15Q9Y619 301 aa11.49□□□□□ -0.57
HDAC3-213ENST00000492506 LOC100289279A0A1B0GTE1 492 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 A0A1W2PNR3 127 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 MFSD2BA6NFX1 497 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 GJE1A6NN92 205 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 SCDO00767 359 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 SMAD9O15198 467 aaKnown RBP11.48□□□□□ -0.57
HDAC3-213ENST00000492506 CYTIPO60759 359 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 FABP3P05413 133 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 ANXA8P13928 327 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 FABP6P51161 128 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 ZNF83P51522 516 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 UFM1P61960 85 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 RASGEF1BQ0VAM2 473 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 BTN1A1Q13410 526 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 EXOSC2Q13868 293 aaKnown RBP11.48□□□□□ -0.57
HDAC3-213ENST00000492506 C1DQ13901 141 aaKnown RBP11.48□□□□□ -0.57
HDAC3-213ENST00000492506 KLHL22Q53GT1 634 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 ELP2Q6IA86 826 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 PGAP1Q75T13 922 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 MEX3DQ86XN8 651 aaKnown RBP11.48□□□□□ -0.57
HDAC3-213ENST00000492506 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 OR6M1Q8NGM8 313 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 APH1BQ8WW43 257 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 C16orf58Q96GQ5 468 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 DIRAS2Q96HU8 199 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 C12orf57Q99622 126 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 MND1Q9BWT6 205 aa11.48□□□□□ -0.57
HDAC3-213ENST00000492506 HEXA-AS1Q9H8Q6 139 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms