RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	CREB3L2	Q70SY1	520 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SMIM5	Q71RC9	77 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	PGAP1	Q75T13	922 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	P4HA3	Q7Z4N8	544 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TMPRSS11B	Q86T26	416 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	RBM23	Q86U06	439 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ISCA2	Q86U28	154 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	BOD1L2	Q8IYS8	172 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TCTE3	Q8IZS6	198 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CYP4Z2P	Q8N1L4	340 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	JAGN1	Q8N5M9	183 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CSNK1A1L	Q8N752	337 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	LRRC52	Q8N7C0	313 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CCDC71L	Q8N9Z2	235 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC38A9	Q8NBW4	561 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TMEM163	Q8TC26	289 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	LGALS14	Q8TCE9	139 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZFAND1	Q8TCF1	268 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CA5BP1	Q8WTZ4	195 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TMEM37	Q8WXS4	190 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TM9SF4	Q92544	642 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	AP3S1	Q92572	193 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	PHF21A	Q96BD5	680 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	MTERF3	Q96E29	417 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	MOCOS	Q96EN8	888 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	IGSF21	Q96ID5	467 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	C12orf42	Q96LP6	360 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	PACRG	Q96M98	296 aa	Predicted RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZFP3	Q96NJ6	502 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF599	Q96NL3	588 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	DEFB118	Q96PH6	123 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC22A12	Q96S37	553 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	PRRT1	Q99946	306 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	UTP23	Q9BRU9	249 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	NICN1	Q9BSH3	213 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	C1orf198	Q9H425	327 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	HEBP1	Q9NRV9	189 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	NECAP2	Q9NVZ3	263 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	B3GNT2	Q9NY97	397 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	KLHL21	Q9UJP4	597 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	MEMO1	Q9Y316	297 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TSSC4	Q9Y5U2	329 aa	Predicted RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SHROOM3	Q8TF72	1996 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	NRCAM	Q92823	1304 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		A0A0G2JMZ2	1700 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	LRRC37A2	A6NM11	1700 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF638	Q14966	1978 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SCN9A	Q15858	1988 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	UBR3	Q6ZT12	1888 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	LTBP4	Q8N2S1	1624 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ASPDH	A6ND91	283 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	FAM220BP	B1ANY3	271 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	TMEM238	C9JI98	176 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PRSS44	E7EML9	344 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PDHX	O00330	501 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CXCR6	O00574	342 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CCS	O14618	274 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	TNFRSF13B	O14836	293 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SIVA1	O15304	175 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SYNGR3	O43761	229 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PCDH7	O60245	1069 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	NOS1AP	O75052	506 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SERPINA5	P05154	406 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RD3L	P0DJH9	198 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ARSB	P15848	533 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	TSPAN8	P19075	237 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GNLY	P22749	145 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	IGFBP5	P24593	272 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CHAT	P28329	748 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	GABRR2	P28476	465 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PRDX3	P30048	256 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PIGA	P37287	484 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CEACAM3	P40198	252 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MAP3K8	P41279	467 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MAP2K4	P45985	399 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZFP36L2	P47974	494 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	RFX2	P48378	723 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	EFNB2	P52799	333 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MAZ	P56270	477 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CLDN15	P56746	228 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZP1	P60852	638 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	LSM3	P62310	102 aa	Known RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZXDB	P98169	803 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SP4	Q02446	784 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MGAT3	Q09327	533 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	BAMBI	Q13145	260 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MYBPH	Q13203	477 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SMCO1	Q147U7	214 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	MAD2L1BP	Q15013	274 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNHIT3	Q15649	155 aa	Predicted RBP	4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF260	Q3ZCT1	412 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PARP15	Q460N3	678 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	CHRFAM7A	Q494W8	412 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ATP6AP1L	Q52LC2	224 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	PAGE3	Q5JUK9	113 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	HES5	Q5TA89	166 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	C9orf135	Q5VTT2	229 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	LYPLAL1	Q5VWZ2	237 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	SLC22A10	Q63ZE4	541 aa		4.18	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF776	Q68DI1	518 aa	Predicted RBP	4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms