RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 HNRNPA0Q13151 305 aaKnown RBP11.56□□□□□ -0.56
COL6A3-211ENST00000491233 MTX3Q5HYI7 312 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 C12orf54Q6X4T0 127 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 TMPRSS11FQ6ZWK6 438 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 FAM122BQ7Z309 247 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 C1QL2Q7Z5L3 287 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 SYT9Q86SS6 491 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 TEX29Q8N6K0 151 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 FAM156AQ8NDB6 213 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 FAM162AQ96A26 154 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 RASD2Q96D21 266 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 FAM46AQ96IP4 442 aaKnown RBP11.56□□□□□ -0.56
COL6A3-211ENST00000491233 NDEL1Q9GZM8 345 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 POFUT1Q9H488 388 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 ZNF446Q9NWS9 450 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 ZDHHC8Q9ULC8 765 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 TMEM5Q9Y2B1 443 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 ARHGAP32A7KAX9 2087 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 WNK2Q9Y3S1 2297 aa11.56□□□□□ -0.56
COL6A3-211ENST00000491233 TEX13CA0A0J9YWL9 993 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 PRSS37A4D1T9 235 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 SGCEO43556 437 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 COX5BP10606 129 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 CTLA4P16410 223 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ADRA2CP18825 462 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 GSTM3P21266 225 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 NUDT2P50583 147 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 TNFAIP6P98066 277 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 PSG7Q13046 419 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 KRR1Q13601 381 aaKnown RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ZBED5Q49AG3 693 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 DCAF12L2Q5VW00 463 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 OTPQ5XKR4 325 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 C8orf82Q6P1X6 216 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ARL9Q6T311 187 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 RRM2BQ7LG56 351 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 TSEN54Q7Z6J9 526 aaKnown RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 CYP4Z1Q86W10 505 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 TREML1Q86YW5 311 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 NPEPL1Q8NDH3 523 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ZFAND2BQ8WV99 257 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 DIRC2Q96SL1 478 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 HOPXQ9BPY8 73 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 WACQ9BTA9 647 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ANKRD19PQ9H560 264 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 NMNAT1Q9HAN9 279 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-211ENST00000491233 DCAF16Q9NXF7 216 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 UBAP1Q9NZ09 502 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 ENPP4Q9Y6X5 453 aa11.55□□□□□ -0.56
COL6A3-211ENST00000491233 J3QLI3 93 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 CCDC22O60826 627 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 H1F0P07305 194 aaKnown RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 LIMS1P48059 325 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 HILS1P60008 231 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 ACTG1P63261 375 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 LCN2P80188 198 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 AQP6Q13520 282 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 FGD3Q5JSP0 725 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 HACD2Q6Y1H2 254 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 VASH1Q7L8A9 365 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 ZER1Q7Z7L7 766 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 PEG10Q86TG7 708 aaKnown RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 SLC7A13Q8TCU3 470 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 RSRC1Q96IZ7 334 aaKnown RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 KCTD14Q9BQ13 255 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 SYT4Q9H2B2 425 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 RERGLQ9H628 205 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 EFCAB1Q9HAE3 211 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 TBCCD1Q9NVR7 557 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 PLEK2Q9NYT0 353 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 KLHL21Q9UJP4 597 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 PURGQ9UJV8 347 aaKnown RBP11.54□□□□□ -0.56
COL6A3-211ENST00000491233 PCDHB10Q9UN67 800 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 NPTNQ9Y639 398 aa11.54□□□□□ -0.56
COL6A3-211ENST00000491233 IMPA2O14732 288 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 AHCYL1O43865 530 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 NDUFB2O95178 105 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 SDHAP31040 664 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 RBMXP38159 391 aaKnown RBP11.53□□□□□ -0.56
COL6A3-211ENST00000491233 CDK5R2Q13319 367 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 ST7LQ8TDW4 575 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 SLC7A6Q92536 515 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 DCLRE1CQ96SD1 692 aaKnown RBP11.53□□□□□ -0.56
COL6A3-211ENST00000491233 GPX7Q96SL4 187 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-211ENST00000491233 SLC6A7Q99884 636 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 ABCD2Q9UBJ2 740 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 ASH2LQ9UBL3 628 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 IL20RAQ9UHF4 553 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 RPS6KA6Q9UK32 745 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 SIGLEC7Q9Y286 467 aa11.53□□□□□ -0.56
COL6A3-211ENST00000491233 SOCS2O14508 198 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 NDUFAB1O14561 156 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 SLC16A7O60669 478 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 KHDRBS3O75525 346 aaKnown RBP11.52□□□□□ -0.57
COL6A3-211ENST00000491233 IGHV2-70P01814 119 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 KITLGP21583 273 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 TNFSF4P23510 183 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 GATA3P23771 443 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 CFPP27918 469 aa11.52□□□□□ -0.57
COL6A3-211ENST00000491233 MDH1P40925 334 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms