RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 AK6Q9Y3D8 172 aaKnown RBP10.84□□□□□ -0.67
HDAC6-230ENST00000488543 CSAG2Q9Y5P2 127 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 KIAA1549Q9HCM3 1950 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 IGF2RP11717 2491 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 PTHLHP12272 177 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 KLK2P20151 261 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 GIFP27352 417 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 TALDO1P37837 337 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 PITPNBP48739 271 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 MRPL28Q13084 256 aaKnown RBP10.84□□□□□ -0.67
HDAC6-230ENST00000488543 ETFDHQ16134 617 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 ZNF239Q16600 458 aaKnown RBP10.84□□□□□ -0.67
HDAC6-230ENST00000488543 METAP1DQ6UB28 335 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-230ENST00000488543 SLC35D2Q76EJ3 337 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 PXKQ7Z7A4 578 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 RPS4Y2Q8TD47 263 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 SNX33Q8WV41 574 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 C5orf34Q96MH7 638 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 PDCD1LG2Q9BQ51 273 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 KCNN2Q9H2S1 579 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 GNG8Q9UK08 70 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 ADAM30Q9UKF2 790 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 CACNG2Q9Y698 323 aa10.84□□□□□ -0.67
HDAC6-230ENST00000488543 A6NIZ1 184 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 LRRC3CA6NJW4 275 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SFTPDP35247 375 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 RAP1BP61224 184 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 RAP1AP62834 184 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 POU3F1Q03052 451 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 MAB21L1Q13394 359 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 CDK5R1Q15078 307 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 TMEM176BQ3YBM2 270 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SLC36A2Q495M3 483 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 LRRC28Q86X40 367 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SIAH3Q8IW03 269 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 ZNF248Q8NDW4 579 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 OR11H4Q8NGC9 324 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 OR14A2Q96R54 314 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 TSPAN10Q9H1Z9 355 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 MRPL22Q9NWU5 206 aaKnown RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 MED29Q9NX70 200 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SLCO1C1Q9NYB5 712 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 NKIRAS2Q9NYR9 191 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 KLHL13Q9P2N7 655 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 HDGFL3Q9Y3E1 203 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 TMEM238LA0A1B0GVL6 79 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 OR2M5A3KFT3 312 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 ANKRD61A6NGH8 418 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 NPIPA5E9PKD4 350 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SLC16A7O60669 478 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SC5DO75845 299 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 ABHD16AO95870 558 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 DAP3P51398 398 aaKnown RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 GBX2P52951 348 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 RRADP55042 308 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 B3GALT5-AS1P59052 145 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 GNG2P59768 71 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 TNK1Q13470 666 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 RIN1Q13671 783 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 OTPQ5XKR4 325 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 SERPINA12Q8IW75 414 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 C9orf62Q8N4C0 152 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 OR6N2Q8NGY6 317 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 FOXN4Q96NZ1 517 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 DERL3Q96Q80 235 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 INTS14Q96SY0 518 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 KCNK17Q96T54 332 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 C12orf49Q9H741 205 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 BRD7Q9NPI1 651 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 MRM2Q9UI43 246 aaKnown RBP10.83□□□□□ -0.68
HDAC6-230ENST00000488543 DKKL1Q9UK85 242 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 NPIPA1Q9UND3 350 aa10.83□□□□□ -0.68
HDAC6-230ENST00000488543 RAMP1O60894 148 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CBR3O75828 277 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 ZNF17P17021 662 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 ALOX5APP20292 161 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 FKBP2P26885 142 aaKnown RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 PTGS2P35354 604 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 RPS27P42677 84 aaKnown RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CLDN12P56749 244 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 SIRPAP78324 504 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 FAM209AQ5JX71 171 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 MIB2Q96AX9 1013 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CREB3L1Q96BA8 519 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 SMIM19Q96E16 107 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 ADAD1Q96M93 576 aaKnown RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 KLHL15Q96M94 604 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 MED28Q9H204 178 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CACNA1GO43497 2377 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 ZNF891A8MT65 544 aaPredicted RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 TRAF3IP2O43734 574 aaPredicted RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CD1AP06126 327 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 OR8G3PP0DMU2 310 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 RAB3BP20337 219 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 NPR2P20594 1047 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 CNR1P21554 472 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 SSTR2P30874 369 aa10.82□□□□□ -0.68
HDAC6-230ENST00000488543 EIF2S3P41091 472 aaKnown RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 GDI2P50395 445 aaKnown RBP10.82□□□□□ -0.68
HDAC6-230ENST00000488543 SOX8P57073 446 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms