RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 HTRA1Q92743 480 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 ZNF775Q96BV0 537 aaPredicted RBP8.34□□□□□ -1.07
SF3B1-211ENST00000487698 SLAMF6Q96DU3 332 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 WDYHV1Q96HA8 205 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 DERL3Q96Q80 235 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 ULBP2Q9BZM5 246 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 NELFAQ9H3P2 528 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 C1orf198Q9H425 327 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 PALMDQ9NP74 551 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 PNRC2Q9NPJ4 139 aaKnown RBP8.34□□□□□ -1.07
SF3B1-211ENST00000487698 GDF2Q9UK05 429 aaPredicted RBP8.34□□□□□ -1.07
SF3B1-211ENST00000487698 FBXL3Q9UKT7 428 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 MCTS1Q9ULC4 181 aaKnown RBP8.34□□□□□ -1.07
SF3B1-211ENST00000487698 R4GMQ9 66 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 MED12LQ86YW9 2145 aa8.34□□□□□ -1.07
SF3B1-211ENST00000487698 A0A0G2JK05 382 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 GPR171O14626 319 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 TFECO14948 347 aaPredicted RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 NCR1O76036 304 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 SYNGR4O95473 234 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 MSR1P21757 451 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 MYL9P24844 172 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 DCTDP32321 178 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 S100A5P33763 92 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 MRPS34P82930 218 aaKnown RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ENDOGQ14249 297 aaKnown RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 INAQ16352 499 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 C3AR1Q16581 482 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 Q499Y3 187 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 RIPPLY2Q5TAB7 128 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 FNDC9Q8TBE3 224 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 AP3S1Q92572 193 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF837Q96EG3 531 aaPredicted RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 WDFY2Q96P53 400 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF416Q9BWM5 594 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 COMMD4Q9H0A8 199 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 RNF122Q9H9V4 155 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 BCO1Q9HAY6 547 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 G6PC2Q9NQR9 355 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ASH2LQ9UBL3 628 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 PRRC2CQ9Y520 2896 aaKnown RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ACOD1A6NK06 481 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF878C9JN71 531 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 TAF4O00268 1085 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 CFL1P23528 166 aaKnown RBP8.33□□□□□ -1.08
SF3B1-211ENST00000487698 MMP16P51512 607 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 HIST1H3AP68431 136 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 HIST2H3PS2Q5TEC6 136 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 PLXDC2Q6UX71 529 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 HIST2H3AQ71DI3 136 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 LINGO2Q7L985 606 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ZADH2Q8N4Q0 377 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 OR2AJ1Q8NGZ0 328 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 OR10AC1Q8NH08 325 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 ATF6BQ99941 703 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 LDAHQ9H6V9 325 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 NOX4Q9NPH5 578 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 FAM206AQ9NX38 181 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 SLC22A13Q9Y226 551 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 POLR1DQ9Y2S0 133 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 LAMA5O15230 3695 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 MGAQ8IWI9 3026 aa8.33□□□□□ -1.08
SF3B1-211ENST00000487698 TRBV5-7A0A0A0MS05 114 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ARPC4-TTLL3A0A0A6YYG9 625 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 A0A1B0GVC2 190 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF724A8MTY0 619 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 H2BFMP0C1H6 154 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 MAPK3P27361 379 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-211ENST00000487698 TNFSF8P32971 234 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 THBS2P35442 1172 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 MAGEB1P43366 347 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF84P51523 738 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF169Q14929 603 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-211ENST00000487698 SGCAQ16586 387 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 HSD17B12Q53GQ0 312 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 CEP78Q5JTW2 689 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 FAM27BQ5VT28 67 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF544Q6NX49 715 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 CROCCP3Q8IVE0 287 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 SIAH3Q8IW03 269 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 LAX1Q8IWV1 398 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 SPACA3Q8IXA5 215 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ZNF676Q8N7Q3 588 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 OR51A4Q8NGJ6 313 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 CPT1CQ8TCG5 803 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 ALKBH3Q96Q83 286 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-211ENST00000487698 RBM24Q9BX46 236 aaKnown RBP8.32□□□□□ -1.08
SF3B1-211ENST00000487698 PRDM14Q9GZV8 571 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 MIXL1Q9H2W2 232 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 EXO5Q9H790 373 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 CRLF2Q9HC73 371 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 PLSCR2Q9NRY7 297 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 DDX28Q9NUL7 540 aaKnown RBP8.32□□□□□ -1.08
SF3B1-211ENST00000487698 EMC3Q9P0I2 261 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 DKK4Q9UBT3 224 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 EMC9Q9Y3B6 208 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 PTPRQQ9UMZ3 2332 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 PIEZO1Q92508 2521 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 A0A1W2PPK0 400 aa8.32□□□□□ -1.08
SF3B1-211ENST00000487698 RER1O15258 196 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms