RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 HPS1Q92902 700 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 MARS2Q96GW9 593 aaKnown RBP13.79□□□□□ -0.2
COL7A1-203ENST00000459756 NUAK2Q9H093 628 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 RERGLQ9H628 205 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 MAGIXQ9H6Y5 334 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 CHODLQ9H9P2 273 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 ELOVL3Q9HB03 270 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 TMEM160Q9NX00 188 aa13.79□□□□□ -0.2
COL7A1-203ENST00000459756 COA3Q9Y2R0 106 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-203ENST00000459756 TCRBV5S2A0A599 114 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 LYNX1G3V0Z9 82 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 H3BSA7 217 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 IDH3BO43837 385 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 DNAJC8O75937 253 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-203ENST00000459756 LYNX1P0DP58 116 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 ZNF16P17020 682 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-203ENST00000459756 ACHEP22303 614 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 CDKN2AP42771 156 aaKnown RBP13.78□□□□□ -0.2
COL7A1-203ENST00000459756 ARHGDIAP52565 204 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 TSPAN31Q12999 210 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 TRIM25Q14258 630 aaKnown RBP13.78□□□□□ -0.2
COL7A1-203ENST00000459756 KCNMB1Q16558 191 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 ALKBH6Q3KRA9 238 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 MBNL2Q5VZF2 373 aaKnown RBP13.78□□□□□ -0.2
COL7A1-203ENST00000459756 PGM2L1Q6PCE3 622 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 CCDC121Q6ZUS5 278 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 RFPL4BQ6ZWI9 263 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 ABHD4Q8TB40 342 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 C4orf45Q96LM5 186 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 SNX18Q96RF0 628 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 IFT27Q9BW83 186 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 TRIM15Q9C019 465 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 NKIRAS2Q9NYR9 191 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 CDC42EP3Q9UKI2 254 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 LYVE1Q9Y5Y7 322 aa13.78□□□□□ -0.2
COL7A1-203ENST00000459756 TNFRSF11BO00300 401 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 SGCEO43556 437 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 DOK2O60496 412 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 LILRA1O75019 489 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 NCR1O76036 304 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 TUBG1P23258 451 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 HTR5AP47898 357 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 PPP1CBP62140 327 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 CHRFAM7AQ494W8 412 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 FAM98BQ52LJ0 330 aaKnown RBP13.77□□□□□ -0.21
COL7A1-203ENST00000459756 SPATA46Q5T0L3 261 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 FAM166AQ6J272 317 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 PGBD2Q6P3X8 592 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 ZNF620Q6ZNG0 422 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 JAZF1Q86VZ6 243 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 SLC25A40Q8TBP6 338 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 KLF14Q8TD94 323 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-203ENST00000459756 MSI2Q96DH6 328 aaKnown RBP13.77□□□□□ -0.21
COL7A1-203ENST00000459756 SAMD8Q96LT4 415 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 LRGUKQ96M69 825 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 OR2J1Q9GZK6 312 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 TUBG2Q9NRH3 451 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 PLEK2Q9NYT0 353 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 ASH2LQ9UBL3 628 aa13.77□□□□□ -0.21
COL7A1-203ENST00000459756 LOC100289279A0A1B0GTE1 492 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 PLSCR5A0PG75 271 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 LRP5LA4QPB2 252 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 ATP5HO75947 161 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 MPZL1O95297 269 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 ABHD16AO95870 558 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 RENP00797 406 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 NGFP01138 241 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 COL8A2P25067 703 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 NOS3P29474 1203 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 LIPAP38571 399 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 MAGEB1P43366 347 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 ERFP50548 548 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 RASSF2P50749 326 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 TMEM33P57088 247 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 CCL8P80075 99 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 MS4A2Q01362 244 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 GLO1Q04760 184 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 RPL13AP3Q6NVV1 102 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 LEG1Q6P5S2 330 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 VASH1Q7L8A9 365 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-203ENST00000459756 NPEPL1Q8NDH3 523 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 OR4C15Q8NGM1 316 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 IPCEF1Q8WWN9 437 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-203ENST00000459756 ASB9Q96DX5 294 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 TSSK2Q96PF2 358 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 NMNAT3Q96T66 252 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 CADM1Q9BY67 442 aaKnown RBP13.76□□□□□ -0.21
COL7A1-203ENST00000459756 CYSLTR2Q9NS75 346 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 TBCCD1Q9NVR7 557 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 LPAR3Q9UBY5 353 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 CGGBP1Q9UFW8 167 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-203ENST00000459756 KCNS2Q9ULS6 477 aa13.76□□□□□ -0.21
COL7A1-203ENST00000459756 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.76□□□□□ -0.21
COL7A1-203ENST00000459756 MALRD1Q5VYJ5 2156 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 IGLV1-36A0A0B4J1U3 117 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 OR6C6A6NF89 314 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 DCTN6O00399 190 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 EBAG9O00559 213 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 GSC2O15499 205 aa13.75□□□□□ -0.21
COL7A1-203ENST00000459756 LMX1BO60663 402 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms