RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CXCR6O00574 342 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 NME4O00746 187 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 PRSS23O95084 383 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 ZNF205O95201 554 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 SERPINA1P01009 418 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 NPPAP01160 153 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 IGHV2-70P01814 119 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 DBHP09172 617 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 CTLA4P16410 223 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 ARHGDIAP52565 204 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 PRSS12P56730 875 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 RAP1BP61224 184 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 PCBD1P61457 104 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 RAP1AP62834 184 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 CDK5R2Q13319 367 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 MTX3Q5HYI7 312 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 FKBP9P1Q75LS8 142 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 TSEN54Q7Z6J9 526 aaKnown RBP9.77□□□□□ -0.85
USP4-204ENST00000416417 SLC15A3Q8IY34 581 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 BPIFB2Q8N4F0 458 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 NANPQ8TBE9 248 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 FAM216AQ8WUB2 273 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 ZFAND2BQ8WV99 257 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 ITLN1Q8WWA0 313 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 TAF15Q92804 592 aaKnown RBP eCLIP9.77□□□□□ -0.85
USP4-204ENST00000416417 FAM46AQ96IP4 442 aaKnown RBP9.77□□□□□ -0.85
USP4-204ENST00000416417 HSH2DQ96JZ2 352 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 ELOVL3Q9HB03 270 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 GRHPRQ9UBQ7 328 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 PURGQ9UJV8 347 aaKnown RBP9.77□□□□□ -0.85
USP4-204ENST00000416417 NPTNQ9Y639 398 aa9.77□□□□□ -0.85
USP4-204ENST00000416417 GMNCA6NCL1 334 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 TRAPPC2LH3BP13 241 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 J3QLI3 93 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 GSTA4O15217 222 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 FSHBP01225 129 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 NR2C1P13056 603 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 EGR1P18146 543 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 IFNA8P32881 189 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 SLC7A2P52569 658 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 GUCY1A3Q02108 690 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 SCGB2A2Q13296 93 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 HLXQ14774 488 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 ZBED5Q49AG3 693 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 IFI44LQ53G44 452 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 FAM205BPQ63HN1 556 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 MBOAT2Q6ZWT7 520 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 USP43Q70EL4 1123 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 VASH1Q7L8A9 365 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 JAZF1Q86VZ6 243 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 BCL6BQ8N143 479 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 SIGLECL1Q8N7X8 197 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 ST7LQ8TDW4 575 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 ACOT11Q8WXI4 607 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 LZICQ8WZA0 190 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 ZNF570Q96NI8 536 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 SUCNR1Q9BXA5 334 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 CYSLTR2Q9NS75 346 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 TMEM106BQ9NUM4 274 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 PTTG3PQ9NZH4 202 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 ZDHHC8Q9ULC8 765 aa9.76□□□□□ -0.85
USP4-204ENST00000416417 COA3Q9Y2R0 106 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 SOX21Q9Y651 276 aaPredicted RBP9.76□□□□□ -0.85
USP4-204ENST00000416417 IGHV3OR16-10A0A075B7F0 116 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 SOCS2O14508 198 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 SGCEO43556 437 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 SPRY1O43609 319 aaPredicted RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 SLC16A7O60669 478 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 DIRAS1O95057 198 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 CD55P08174 381 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 ADH4P08319 380 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 CD14P08571 375 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 GSK3BP49841 420 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 UBA52P62987 128 aaKnown RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 KRR1Q13601 381 aaKnown RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 ZMYND11Q15326 602 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 MEP1BQ16820 701 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 UNQ6126/PRO20091Q6UXV3 157 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 CBLL1Q75N03 491 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 FAM122BQ7Z309 247 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 DEFB108BQ8NET1 73 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 ZNF420Q8TAQ5 688 aaPredicted RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 FNDC8Q8TC99 324 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 DVL3Q92997 716 aaPredicted RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 RBM4Q9BWF3 364 aaKnown RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 SYT4Q9H2B2 425 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 ARGLU1Q9NWB6 273 aaPredicted RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 PLEK2Q9NYT0 353 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 ASH2LQ9UBL3 628 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 ZNF69Q9UC07 566 aa9.75□□□□□ -0.85
USP4-204ENST00000416417 NDRG4Q9ULP0 352 aaKnown RBP9.75□□□□□ -0.85
USP4-204ENST00000416417 PRSS37A4D1T9 235 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 H0YL77 283 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 XKRYO14609 159 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 RER1O15258 196 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 ICMTO60725 284 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 COX4I1P13073 169 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 GSTM3P21266 225 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 LIPAP38571 399 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 CENPAP49450 140 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms