RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ALOX12BO75342 701 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 KLK3P07288 261 aaPredicted RBP13.25□□□□□ -0.29
USP4-203ENST00000415188 ANXA2P07355 339 aaKnown RBP13.25□□□□□ -0.29
USP4-203ENST00000415188 HEXBP07686 556 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 TCEA1P23193 301 aaKnown RBP13.25□□□□□ -0.29
USP4-203ENST00000415188 GIFP27352 417 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 MSX1P28360 303 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 SRP9P49458 86 aaKnown RBP13.25□□□□□ -0.29
USP4-203ENST00000415188 NKAIN1Q4KMZ8 207 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 C1QL3Q5VWW1 255 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 OLFML2AQ68BL7 652 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 FCRLAQ7L513 359 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 OR5L2Q8NGL0 311 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 LILRB4Q8NHJ6 448 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 MFSD8Q8NHS3 518 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 FCAMRQ8WWV6 532 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 MCHR2Q969V1 340 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 OR51J1Q9H342 316 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 STEAP1Q9UHE8 339 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 HECTD1Q9ULT8 2610 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 RELNP78509 3460 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 A0A1B0GVI7 797 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 SLC22A23A1A5C7 686 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 ARGFXA6NJG6 315 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 FTCDNL1E5RQL4 147 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 ETV2O00321 342 aaPredicted RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 ZNF593O00488 134 aaPredicted RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 KIR3DL2P43630 455 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 DAP3P51398 398 aaKnown RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 FOXK1P85037 733 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 RIPPLY1Q0D2K3 151 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 KLRB1Q12918 225 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 TOMM20Q15388 145 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 TEX30Q5JUR7 227 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 TMEM69Q5SWH9 247 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 POMZP3Q6PJE2 187 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 FAM198BQ6UWH4 519 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 PRSS35Q8N3Z0 413 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 SYNPRQ8TBG9 265 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 DUSP19Q8WTR2 217 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 HGDQ93099 445 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 ZNF587Q96SQ5 575 aaPredicted RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 SMAD5Q99717 465 aaKnown RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 RANBP3Q9H6Z4 567 aaPredicted RBP13.24□□□□□ -0.29
USP4-203ENST00000415188 ELOVL3Q9HB03 270 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 SLC17A5Q9NRA2 495 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 SLCO1C1Q9NYB5 712 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 KCNG2Q9UJ96 466 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 ING4Q9UNL4 249 aa13.24□□□□□ -0.29
USP4-203ENST00000415188 TRAV6A0A075B6T7 132 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 CYSRT1A8MQ03 144 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 SLC16A7O60669 478 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 HLA-DQA2P01906 255 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 ANXA3P12429 323 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 ADRA2CP18825 462 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 SOX2P48431 317 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 PTH2RP49190 550 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 RIDAP52758 137 aaKnown RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 GLO1Q04760 184 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 FCN2Q15485 313 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 MEP1BQ16820 701 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 WDR38Q5JTN6 314 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 DNM1P46Q6ZS02 220 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 ESPNLQ6ZVH7 1005 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 LUZP2Q86TE4 346 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 APCDD1LQ8NCL9 501 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 ADAMTS17Q8TE56 1095 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 POTEKPQ9BYX7 375 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 C19orf25Q9UFG5 118 aaPredicted RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 TCFL5Q9UL49 500 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 IGLV3-32A0A0A0MS00 114 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 VSTM2BA6NLU5 285 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 GMFGO60234 142 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 FSTP19883 344 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 CCL11P51671 97 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 DCDP81605 110 aaKnown RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 PUDPQ08623 228 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 GSG1Q2KHT4 349 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 RNASE12Q5GAN4 147 aaKnown RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 SLC25A53Q5H9E4 307 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 CREB3L2Q70SY1 520 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 H1FNTQ75WM6 255 aaPredicted RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 SLC7A5P1Q8MH63 180 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 OR52I2Q8NH67 350 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 TSEN15Q8WW01 171 aaKnown RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 ASB10Q8WXI3 467 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 TMEM106AQ96A25 262 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 C8orf44Q96CB5 159 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 DDIT4LQ96D03 193 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 AUNIPQ9H7T9 357 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 HRASLSQ9HDD0 168 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 FANCFQ9NPI8 374 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 SDHAF3Q9NRP4 125 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 MRPL22Q9NWU5 206 aaKnown RBP13.23□□□□□ -0.29
USP4-203ENST00000415188 FBXL3Q9UKT7 428 aa13.23□□□□□ -0.29
USP4-203ENST00000415188 COL12A1Q99715 3063 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 ANKRD20A5PA0PJZ0 165 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 XRCC3O43542 346 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 PEX14O75381 377 aa13.22□□□□□ -0.29
USP4-203ENST00000415188 KHDRBS3O75525 346 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms