RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PMPCAQ10713 525 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 SHEQ5VZ18 495 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 GLT8D1Q68CQ7 371 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 CHST4Q8NCG5 386 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 ZBTB8AQ96BR9 441 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 TSNAXQ99598 290 aaKnown RBP18.85■□□□□ 0.61
CTCF-202ENST00000401394 FAM117AQ9C073 453 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 DHDHQ9UQ10 334 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 FAM96BQ9Y3D0 163 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 NFYBP25208 207 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 ACKR1Q16570 336 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 TMEM240Q5SV17 173 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 WBP2NLQ6ICG8 309 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 OR5M8Q8NGP6 311 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 ICOSLGO75144 302 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 CYB5AP00167 134 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 CLPSP04118 112 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 GPM6BQ13491 265 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 MCATQ8IVS2 390 aaKnown RBP18.84■□□□□ 0.61
CTCF-202ENST00000401394 MESP1Q9BRJ9 268 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.84■□□□□ 0.61
CTCF-202ENST00000401394 ESRP2Q9H6T0 727 aaKnown RBP18.84■□□□□ 0.61
CTCF-202ENST00000401394 FN3KRPQ9HA64 309 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 ANOS1P23352 680 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 AKIRIN2Q53H80 203 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 C16orf47Q6ZP98 133 aaPredicted RBP18.84■□□□□ 0.61
CTCF-202ENST00000401394 ZNF615Q8N8J6 731 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 ASB12Q8WXK4 309 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 TSLPQ969D9 159 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 TAS2R8Q9NYW2 309 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 PCDH15Q96QU1 1955 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 A0A0B4J2A0 478 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 TMEM200CA6NKL6 621 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 METTL12A8MUP2 240 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 B4DGG1 531 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 PMS2P2O95744 297 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 PGAM2P15259 253 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 PTCRAQ6ISU1 281 aaPredicted RBP18.84■□□□□ 0.61
CTCF-202ENST00000401394 LRFN5Q96NI6 719 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 OR8B4Q96RC9 309 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 MAP3K3Q99759 626 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 G6PC3Q9BUM1 346 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 SLC25A32Q9H2D1 315 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 C1orf198Q9H425 327 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 EPHA6Q9UF33 1036 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 SHPKQ9UHJ6 478 aa18.84■□□□□ 0.61
CTCF-202ENST00000401394 OR2AT4A6NND4 320 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 C17orf105B2RV13 164 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 OR6A2O95222 327 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 UTS2O95399 124 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 GNB3P16520 340 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 TAS2R19P59542 299 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 RAB12Q6IQ22 244 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 KCNRGQ8N5I3 272 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 EIF4E3Q8N5X7 224 aaKnown RBP18.83■□□□□ 0.61
CTCF-202ENST00000401394 ABHD6Q9BV23 337 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 TLNRD1Q9H1K6 362 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 PTGES2Q9H7Z7 377 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 LRP12Q9Y561 859 aa18.83■□□□□ 0.61
CTCF-202ENST00000401394 SULT1C2O00338 296 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 RENP00797 406 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 CASRP41180 1078 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 PSMD4P55036 377 aaKnown RBP18.83■□□□□ 0.6
CTCF-202ENST00000401394 ZNF117Q03924 483 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 ZP2Q05996 745 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 SNTB1Q13884 538 aaKnown RBP18.83■□□□□ 0.6
CTCF-202ENST00000401394 FAM166AQ6J272 317 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 TAF8Q7Z7C8 310 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 FJX1Q86VR8 437 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 TMED6Q8WW62 240 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 RRNAD1Q96FB5 475 aaKnown RBP18.83■□□□□ 0.6
CTCF-202ENST00000401394 PCOLCE2Q9UKZ9 415 aa18.83■□□□□ 0.6
CTCF-202ENST00000401394 COA3Q9Y2R0 106 aaPredicted RBP18.83■□□□□ 0.6
CTCF-202ENST00000401394 IGKV1D-43A0A0B4J1Z2 117 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 SULT2B1O00204 365 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 RAB3AP20336 220 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 OR1D4P47884 311 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 ETV3LQ6ZN32 361 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 METTL21AQ8WXB1 218 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 SOX7Q9BT81 388 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 FOXQ1Q9C009 403 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 GLS2Q9UI32 602 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 P2RY10O00398 339 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 NTSR1P30989 418 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 CD96P40200 585 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 PABPC1L2AQ5JQF8 200 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 CLVS2Q5SYC1 327 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 ARHGEF39Q8N4T4 335 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 ELP5Q8TE02 316 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 HERVK_113Q902F9 699 aa18.82■□□□□ 0.6
CTCF-202ENST00000401394 CMSS1Q9BQ75 279 aaKnown RBP18.82■□□□□ 0.6
CTCF-202ENST00000401394 PELOQ9BRX2 385 aaKnown RBP18.82■□□□□ 0.6
CTCF-202ENST00000401394 NUP210LQ5VU65 1888 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 A0A1B0GTI1 187 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 ZNF264O43296 627 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 PMP2P02689 132 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 ERCC1P07992 297 aaPredicted RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 HRH1P35367 487 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 NPBWR1P48145 328 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 ZNF784Q8NCA9 323 aaPredicted RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms