RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SCO1O75880 301 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 CYB5AP00167 134 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 MAS1P04201 325 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 CRABP1P29762 137 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 RIDAP52758 137 aaKnown RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 PAQR6Q6TCH4 344 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 METAP1DQ6UB28 335 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF782Q6ZMW2 699 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 FAM57BQ71RH2 274 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 CMIPQ8IY22 773 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 BBS1Q8NFJ9 593 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 AKR7LQ8NHP1 331 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 SLC25A43Q8WUT9 341 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 TRMT61AQ96FX7 289 aaKnown RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF700Q9H0M5 742 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 KCNE5Q9UJ90 142 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 A0A087WUJ7 227 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ANKUB1A6NFN9 424 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 FABP7O15540 132 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 SELENOFO60613 162 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 STOMP27105 288 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 CAV3P56539 151 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 NKPD1Q17RQ9 610 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 OR5D18Q8NGL1 313 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 OR8S1Q8NH09 359 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ZFP3Q96NJ6 502 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 PLA2G12AQ9BZM1 189 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 C12orf10Q9HB07 376 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 PLEKHB1Q9UF11 243 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 KCNMB2Q9Y691 235 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 PRKYO43930 277 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 HLA-HP01893 362 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 GABRA4P48169 554 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF83P51522 516 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 WNT4P56705 351 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 IDNKQ5T6J7 187 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ZBTB37Q5TC79 503 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 SLC18B1Q6NT16 456 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 COMMD7Q86VX2 200 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 LRFN5Q96NI6 719 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF552Q9H707 407 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 A4GNTQ9UNA3 340 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 CDK2AP1O14519 115 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 WT1P19544 449 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 LAP3P28838 519 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 RPL13AP3Q6NVV1 102 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF322Q6U7Q0 402 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 MRPL21Q7Z2W9 205 aaKnown RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 KANSL1Q7Z3B3 1105 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 TSEN54Q7Z6J9 526 aaKnown RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 DUSP18Q8NEJ0 188 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 MIB2Q96AX9 1013 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 TGIF2Q9GZN2 237 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ELOVL3Q9HB03 270 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 SLC25A19Q9HC21 320 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 LHX6Q9UPM6 363 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 LSM2Q9Y333 95 aaKnown RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 MSRB2Q9Y3D2 182 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 USP9YO00507 2555 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 TMEM269A0A1B0GVZ9 245 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 CDC42EP2O14613 210 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 MT-ND5P03915 603 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 CSN2P05814 226 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 RAB40ALP0C0E4 278 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 HLA-DOBP13765 273 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 GCH1P30793 250 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 SRD5A2P31213 254 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 RPS25P62851 125 aaKnown RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ETFDHQ16134 617 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 GIMAP5Q96F15 307 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 TRAF4Q9BUZ4 470 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 OBP2BQ9NPH6 170 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 TRIM36Q9NQ86 728 aa9.23□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF223Q9UK11 482 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-205ENST00000392004 A0A0J9YW62 118 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 A0A1W2PRQ8 180 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 PLSCR5A0PG75 271 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 MEX3AA1L020 520 aaKnown RBP9.22□□□□□ -0.93
COL6A3-205ENST00000392004 CALCBP10092 127 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 ANXA3P12429 323 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 KRT74Q7RTS7 529 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 GALNT11Q8NCW6 608 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 TMEM163Q8TC26 289 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 CREB3L1Q96BA8 519 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 AIFM2Q9BRQ8 373 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 DPCDQ9BVM2 203 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-205ENST00000392004 DNAJB11Q9UBS4 358 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 PLCE1Q9P212 2302 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 HEATR1Q9H583 2144 aaKnown RBP9.22□□□□□ -0.93
COL6A3-205ENST00000392004 FAM230AA0A1W2PPH8 454 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 ADRA2AP08913 450 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 CPEP16870 476 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 NAGAP17050 411 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 ADH7P40394 386 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 CRYBA2P53672 197 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 FUT5Q11128 374 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 FCN2Q15485 313 aa9.22□□□□□ -0.93
COL6A3-205ENST00000392004 PLEKHN1Q494U1 663 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-205ENST00000392004 TMEM205Q6UW68 189 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms