RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 SLC39A13Q96H72 371 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 PLEKHF2Q9H8W4 249 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 PPT2Q9UMR5 302 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HS3ST2Q9Y278 367 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SLC16A6O15403 523 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 EIF1BO60739 113 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 PRSS36Q5K4E3 855 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HIST2H3AQ71DI3 136 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ASH2LQ9UBL3 628 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 FLVCR2Q9UPI3 526 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SETD1AO15047 1707 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SOD1P00441 154 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HIST1H1CP16403 213 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HSF1Q00613 529 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 DEFB109BQ30KR1 87 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ADAMTSL4Q6UY14 1074 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR5B3Q8NH48 314 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR52I2Q8NH67 350 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 PHOSPHO2Q8TCD6 241 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 BOD1Q96IK1 185 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 DDOQ99489 341 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SARGQ9BW04 601 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HES7Q9BYE0 225 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF331Q9NQX6 463 aaPredicted RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR51B4Q9Y5P0 310 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM189-UBE2V1I3L0A0 370 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 OR2J2O76002 312 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 IGHEP01854 428 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 C6orf15Q6UXA7 325 aaPredicted RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 C11orf42Q8N5U0 333 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 BCORP1Q8N888 145 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 EDEM2Q9BV94 578 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 LOC107986453A0A1B0GWG9 222 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ICOSLGO75144 302 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 TBPP20226 339 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 RPL27P61353 136 aaKnown RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 RAB19A4D1S5 217 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 C4orf47A7E2U8 309 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 TERTO14746 1132 aaKnown RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 CHEK1O14757 476 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ATP1B1P05026 303 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 GLRA1P23415 457 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM207Q6UWW9 146 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 GPR119Q8TDV5 335 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 RPUSD4Q96CM3 377 aaKnown RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 MS4A4AQ96JQ5 239 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 RTL8AQ9BWD3 113 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ISYNA1Q9NPH2 558 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF346Q9UL40 294 aaKnown RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 MEIKINA0A087WXM9 373 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 A0A1B0GTW7 788 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ARPC3O15145 178 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 RGS11O94810 467 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 NKX2-1P43699 371 aaPredicted RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 PPIAP62937 165 aaKnown RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 DGCR2P98153 550 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 KIAA0141Q14154 515 aaPredicted RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 MAML2Q8IZL2 1156 aaPredicted RBP12.53□□□□□ -0.4
COL4A1-201ENST00000375820 MAGT1Q9H0U3 335 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 SDHBP21912 280 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 OR52N5Q8NH56 324 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 TSLPQ969D9 159 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 PSD2Q9BQI7 771 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF416Q9BWM5 594 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 HDAC8Q9BY41 377 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 SLCO5A1Q9H2Y9 848 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 FGF22Q9HCT0 170 aa12.53□□□□□ -0.4
COL4A1-201ENST00000375820 A0A1W2PPH5 198 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 OR2C1O95371 312 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 GPR12P47775 334 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF133P52736 654 aaPredicted RBP12.52□□□□□ -0.4
COL4A1-201ENST00000375820 LGI3Q8N145 548 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 C11orf40Q8WZ69 217 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 SLC35E1Q96K37 410 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 KIAA1456Q9P272 454 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 BTBD17A6NE02 478 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 GPR37O15354 613 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF385BQ569K4 471 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM81Q6P7N7 255 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 PLSCR3Q9NRY6 295 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 TNFRSF19Q9NS68 423 aa12.52□□□□□ -0.4
COL4A1-201ENST00000375820 OR5K3A6NET4 321 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 CXorf67Q86X51 503 aaPredicted RBP12.52□□□□□ -0.41
COL4A1-201ENST00000375820 MED29Q9NX70 200 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 FPR3P25089 353 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 HENMT1Q5T8I9 393 aaKnown RBP12.52□□□□□ -0.41
COL4A1-201ENST00000375820 TMEM268Q5VZI3 342 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 ALKAL1Q6UXT8 129 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 APH1BQ8WW43 257 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 MARC2Q969Z3 335 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 KCND3Q9UK17 655 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 MYH4Q9Y623 1939 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 NUP188Q5SRE5 1749 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 OR6C68A6NDL8 312 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 HEXAP06865 529 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 TBXA2RP21731 343 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 EIF2DP41214 584 aaKnown RBP12.52□□□□□ -0.41
COL4A1-201ENST00000375820 EIF1P41567 113 aaKnown RBP12.52□□□□□ -0.41
COL4A1-201ENST00000375820 FAM219BQ5XKK7 198 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 LYSMD2Q8IV50 215 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms