RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 RASGEF1BQ0VAM2 473 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 PPP1R1AQ13522 171 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 ZNF141Q15928 474 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 CDNFQ49AH0 187 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 ETV3LQ6ZN32 361 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 CSNK1A1LQ8N752 337 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 INO80EQ8NBZ0 244 aaPredicted RBP12.35□□□□□ -0.43
USP49-201ENST00000373006 OR1M1Q8NGA1 313 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 RXFP4Q8TDU9 374 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 CST11Q9H112 138 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 MBD2Q9UBB5 411 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 HIF3AQ9Y2N7 669 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 YBX2Q9Y2T7 364 aaKnown RBP12.35□□□□□ -0.43
USP49-201ENST00000373006 TMED7Q9Y3B3 224 aa12.35□□□□□ -0.43
USP49-201ENST00000373006 EFCAB7A8K855 629 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ZNF432O94892 652 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 BTF3P20290 206 aaKnown RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 PRKXP51817 358 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SPOCK1Q08629 439 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CD226Q15762 336 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SGCAQ16586 387 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ISXQ2M1V0 245 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 PLEKHN1Q494U1 663 aaPredicted RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 CCDC157Q569K6 752 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 C5orf46Q6UWT4 87 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 GTPBP8Q8N3Z3 284 aaPredicted RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 LRRC75AQ8NAA5 344 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 TMEM229BQ8NBD8 167 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ACBD4Q8NC06 268 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 Q9N2J8 555 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 MMP25Q9NPA2 562 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 TAS2R4Q9NYW5 299 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 DENND4AQ7Z401 1863 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CPED1A4D0V7 1026 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CT45A8P0DMV1 189 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CT45A9P0DMV2 189 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 HTR2CP28335 458 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 NPBWR1P48145 328 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 EGR4Q05215 589 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ZNF345Q14585 488 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CT45A2Q5DJT8 189 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 OR52W1Q6IF63 320 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 JAGN1Q8N5M9 183 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 GVQW1Q8N7I0 195 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 BCORP1Q8N888 145 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 INTS12Q96CB8 462 aaKnown RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 ASB16Q96NS5 453 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 GPX7Q96SL4 187 aaPredicted RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 CCDC3Q9BQI4 270 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 LMF2Q9BU23 707 aaKnown RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 KLK13Q9UKR3 277 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 FAM96BQ9Y3D0 163 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 NPIPB9F8W1W9 429 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SULT2B1O00204 365 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 TNFSF14O43557 240 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 FOXS1O43638 330 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 OR2T1O43869 369 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ICOSLGO75144 302 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 PGAM2P15259 253 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 AKR1C4P17516 323 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SCAND1P57086 179 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 BTG2P78543 158 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 INPP5JQ15735 1006 aaPredicted RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 TMEM225Q6GV28 225 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 FRMD1Q8N878 549 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 CMBLQ96DG6 245 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SLC41A2Q96JW4 573 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 RHOVQ96L33 236 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 SELENOIQ9C0D9 397 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 ZNF629Q9UEG4 869 aaPredicted RBP12.34□□□□□ -0.43
USP49-201ENST00000373006 EPHA6Q9UF33 1036 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 B9D1Q9UPM9 204 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 DHDHQ9UQ10 334 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 KCNK7Q9Y2U2 307 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 TRANK1O15050 2925 aa12.34□□□□□ -0.43
USP49-201ENST00000373006 YKT6O15498 198 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 HNRNPA1P09651 372 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP49-201ENST00000373006 H2AFB1P0C5Y9 115 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 ADAM8P78325 824 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 IL13RA1P78552 427 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 AVPI1Q5T686 147 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 FAM174AQ8TBP5 190 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 ZC3H10Q96K80 434 aaKnown RBP12.33□□□□□ -0.44
USP49-201ENST00000373006 KXD1Q9BQD3 176 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 IGFLR1Q9H665 355 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 ASCC3Q8N3C0 2202 aaKnown RBP12.33□□□□□ -0.44
USP49-201ENST00000373006 A0A0A6YYC8 382 aaPredicted RBP12.33□□□□□ -0.44
USP49-201ENST00000373006 C17orf51A8MQB3 221 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 I3L1I5 382 aaPredicted RBP12.33□□□□□ -0.44
USP49-201ENST00000373006 SPARCP09486 303 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 SLC25A4P12235 298 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 HPGDP15428 266 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 MFGE8Q08431 387 aaPredicted RBP12.33□□□□□ -0.44
USP49-201ENST00000373006 PMPCAQ10713 525 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 C1QL3Q5VWW1 255 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 NAA40Q86UY6 237 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 PARGQ86W56 976 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 C16orf52Q8NHV5 167 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 TMED6Q8WW62 240 aa12.33□□□□□ -0.44
USP49-201ENST00000373006 ASB13Q8WXK3 278 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms