RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 C12orf73Q69YU5 71 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 KIAA1958Q8N8K9 716 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 FKRPQ9H9S5 495 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 MRPL22Q9NWU5 206 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 MEIKINA0A087WXM9 373 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 C20orf202A1L168 122 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 ADAMTSL4Q6UY14 1074 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 GAR1Q9NY12 217 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 OSGIN2Q9Y236 505 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 PHOX2AO14813 284 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 ZFAND5O76080 213 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 RPUSD3Q6P087 351 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 MARCH1Q8TCQ1 289 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 RAB1AP62820 205 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 ZCCHC4Q9H5U6 513 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 RNF212BA8MTL3 300 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 DUSP3P51452 185 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 GPNMBQ14956 572 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 WDR88Q6ZMY6 472 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 MARCH3Q86UD3 253 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 COL5A3P25940 1745 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 K7ESM1 405 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 IL5P05113 134 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 IRF2P14316 349 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 SDHBP21912 280 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 RPL27P61353 136 aaKnown RBP17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 DUSP8Q13202 625 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 C9orf135Q5VTT2 229 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 ADGRG3Q86Y34 549 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 FGF13Q92913 245 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 NKX3-1Q99801 234 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 RHOFQ9HBH0 211 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 DLL4Q9NR61 685 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 PADI1Q9ULC6 663 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 DAPP1Q9UN19 280 aa17.83■□□□□ 0.45
CCDC88B-202ENST00000356786 MYO7AQ13402 2215 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 PRAMEF4O60810 478 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 MGST1P10620 155 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 SIRT6Q8N6T7 355 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 ASH2LQ9UBL3 628 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 TRAV1-2A0A0B4J238 106 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 ELLP55199 621 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 C1orf140Q5VVS0 124 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 METRNLQ641Q3 311 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 IL22RA1Q8N6P7 574 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 MSI2Q96DH6 328 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 LYSMD1Q96S90 227 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 IL23AQ9NPF7 189 aa17.83■□□□□ 0.44
CCDC88B-202ENST00000356786 PDGFBP01127 241 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 ATF1P18846 271 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 RPS15P62841 145 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 DEFB103AP81534 67 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 LYG2Q86SG7 212 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 NAXDQ8IW45 347 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 TCTN2Q96GX1 697 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 SLC46A1Q96NT5 459 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 SPACA5Q96QH8 159 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 A0A087WV62 115 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 RFPL4AA6NLU0 287 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 RFPL4AL1F8VTS6 287 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 DUSP1P28562 367 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 HRH1P35367 487 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 HLXQ14774 488 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 BADQ92934 168 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 MARCH5Q9NX47 278 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 UBR3Q6ZT12 1888 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 F5P12259 2224 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 WNT1P04628 370 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 CTSLP07711 333 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 PTHLHP12272 177 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 ACKR3P25106 362 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 INSL4Q14641 139 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 RNF151Q2KHN1 245 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 C19orf47Q8N9M1 422 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 CABLES2Q9BTV7 478 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 SLC22A13Q9Y226 551 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 OR6C68A6NDL8 312 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 APOA2P02652 100 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 SDHAP31040 664 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF133P52736 654 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 OR8G2PQ6IF36 304 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 LCN15Q6UWW0 184 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 OR2L13Q8N349 312 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 OR1J1Q8NGS3 322 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 LRFN5Q96NI6 719 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF2Q9BSG1 426 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 TOLLIPQ9H0E2 274 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 PCDHB10Q9UN67 800 aa17.82■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF727A8MUV8 499 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 ITGBL1O95965 494 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 PRPH2P23942 346 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 OR14A16Q8NHC5 309 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 CPT1CQ8TCG5 803 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 NRSN2Q9GZP1 204 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 ZNF250P15622 560 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 PTAFRP25105 342 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 BAMBIQ13145 260 aa17.81■□□□□ 0.44
CCDC88B-202ENST00000356786 FAM58AQ8N1B3 248 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms