RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DUX4Q9UBX2 424 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 RIF1Q5UIP0 2472 aaKnown RBP11.49□□□□□ -0.57
CLK3-201ENST00000345005 ALPK2Q86TB3 2170 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ARPC4-TTLL3A0A0A6YYG9 625 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 SPAARA0A1B0GVQ0 90 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 A0A1W2PRG6 482 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 H0YC42 278 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 J3QLW9 94 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 EFNA2O43921 213 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 IGHMP01871 453 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 P04436 131 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 UCHL1P09936 223 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ZNF19P17023 458 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 CXCL3P19876 107 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 OR7A5Q15622 319 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 MESTQ5EB52 335 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ACER2Q5QJU3 275 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 C3orf33Q6P1S2 294 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 OR51L1Q8NGJ5 315 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 OR1J4Q8NGS1 313 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 OR2T4Q8NH00 348 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ZNF671Q8TAW3 534 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ZPLD1Q8TCW7 415 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 RAB40AQ8WXH6 277 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 THAP4Q8WY91 577 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 GHSRQ92847 366 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 C4orf36Q96KX1 117 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 PGLYRP3Q96LB9 341 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ZFP3Q96NJ6 502 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 ALG12Q9BV10 488 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 C20orf85Q9H1P6 137 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 PROK2Q9HC23 129 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 KLHL9Q9P2J3 617 aa11.49□□□□□ -0.57
CLK3-201ENST00000345005 LIPT2A6NK58 231 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 SHISA8B8ZZ34 492 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ZNF593O00488 134 aaPredicted RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 CD3GP09693 182 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 IFNGR1P15260 489 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ZP3P21754 424 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 DPP4P27487 766 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ACVR1BP36896 505 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 MNDAP41218 407 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 SRP9P49458 86 aaKnown RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 DSCR4P56555 118 aaPredicted RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 ZNF85Q03923 595 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 DBPQ10586 325 aaPredicted RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 POU4F3Q15319 338 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ACKR1Q16570 336 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 B3GNTL1Q67FW5 361 aaPredicted RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 SEZ6L2Q6UXD5 910 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 SLC35F2Q8IXU6 374 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 OR6K6Q8NGW6 343 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ADAMTS17Q8TE56 1095 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 HSD17B8Q92506 261 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 NKD1Q969G9 470 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 SMIM19Q96E16 107 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 TMEM41AQ96HV5 264 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 THOC3Q96J01 351 aaKnown RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 RBP7Q96R05 134 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 UTP23Q9BRU9 249 aaKnown RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 SLC6A15Q9H2J7 730 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 SRA1Q9HD15 236 aaKnown RBP11.48□□□□□ -0.57
CLK3-201ENST00000345005 CHST11Q9NPF2 352 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 ALKBH4Q9NXW9 302 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 RDH8Q9NYR8 311 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 B3GALT5Q9Y2C3 310 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 GVINP1Q7Z2Y8 2422 aa11.48□□□□□ -0.57
CLK3-201ENST00000345005 hCG_1807616A0A1W2PRN6 198 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 OR6C65A6NJZ3 312 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 ATP6V1G2-DDX39BF2Z307 99 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 MS4A18H0YCH9 400 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 H3BML4 177 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 CBR3O75828 277 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 KRT33AO76009 404 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 RGS11O94810 467 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 LIFP15018 202 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 GDNFP39905 211 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 BLVRAP53004 296 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 OR10A3P58181 314 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 GABREP78334 506 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 DGCR2P98153 550 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 OPCMLQ14982 345 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 MS4A18Q3C1V0 323 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 LINC01590Q5TEZ4 76 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 ZNF468Q5VIY5 522 aaPredicted RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 SHEQ5VZ18 495 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 UNQ9370/PRO34162Q6UXP9 181 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 C3P1Q6ZMU1 363 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 NLRC3Q7RTR2 1065 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 GTPBP8Q8N3Z3 284 aaPredicted RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 FTMTQ8N4E7 242 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 IL22RA1Q8N6P7 574 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 ZNF519Q8TB69 540 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 ZNRF4Q8WWF5 429 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 FCAMRQ8WWV6 532 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 PSMF1Q92530 271 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 NSMAFQ92636 917 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 S100A16Q96FQ6 103 aaKnown RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 NPDC1Q9NQX5 325 aaPredicted RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 ST6GALNAC2Q9UJ37 374 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms