RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RNF122Q9H9V4 155 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 MBNL1Q9NR56 388 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 LAMP5Q9UJQ1 280 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC27A6Q9Y2P4 619 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 BRWD1Q9NSI6 2320 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3DA0A087WVF3 549 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3IA0A087WXS9 549 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3LB9A6J9 549 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 F8VVB4 439 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 F8VWA3 439 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 LRP3O75074 770 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 AGR2O95994 175 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 CD14P08571 375 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3HP0C7X1 549 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 LSSP48449 732 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 SRSF4Q08170 494 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 SKP2Q13309 424 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 KIF26BQ2KJY2 2108 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3CQ6IPX1 549 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 DGAT2L6Q6ZPD8 337 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TBC1D3Q8IZP1 549 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 OR5T3Q8NGG3 340 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 GTF3AQ92664 365 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 BADQ92934 168 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF558Q96NG5 402 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 CMKLR1Q99788 373 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 OR5AC2Q9NZP5 309 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 LPAR3Q9UBY5 353 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 MRPS33Q9Y291 106 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 PRRT4C9JH25 899 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 FGF17O60258 216 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 FBXO24O75426 580 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ADAP1O75689 374 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 IGKV1D-16P01601 117 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 CRHP06850 196 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 NDUFB7P17568 137 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 RIDAP52758 137 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ACTR1AP61163 376 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ADAM8P78325 824 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ELOCQ15369 112 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 PLPP4Q5VZY2 271 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 FOXRED2Q8IWF2 684 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ASB13Q8WXK3 278 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 EDAQ92838 391 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 MCHR2Q969V1 340 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 EDEM2Q9BV94 578 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC2A4RGQ9NR83 387 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 DNAJB12Q9NXW2 375 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 C19orf53Q9UNZ5 99 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 YBX2Q9Y2T7 364 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 MRPS2Q9Y399 296 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 NOTCH4Q99466 2003 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 NUP210LQ5VU65 1888 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 WIPF3A6NGB9 483 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 PRAMEF26H0Y7S4 382 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 P2RX6O15547 441 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 BRINP1O60477 761 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 C8AP07357 584 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 CAV2P51636 162 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 DPTQ07507 201 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 DPY19L2P2Q6ZN68 376 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC25A42Q86VD7 318 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FAM24BQ8N5W8 94 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 COX14Q96I36 57 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 SULT4A1Q9BR01 284 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 COMMD4Q9H0A8 199 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FN3KRPQ9HA64 309 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 WDFY4Q6ZS81 3184 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 MED6O75586 246 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 YIF1AO95070 293 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 CXCL10P02778 98 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FOLR2P14207 255 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 PI3P19957 117 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 ACKR3P25106 362 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FAM76BQ5HYJ3 339 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FHL5Q5TD97 284 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 PAPD4Q6PIY7 484 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 ABHD13Q7L211 337 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC16A9Q7RTY1 509 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 MDGA2Q7Z553 956 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF595Q8IYB9 648 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 GATSQ8NAP1 163 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 MITD1Q8WV92 249 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC41A2Q96JW4 573 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 PHB2Q99623 299 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 PLA2G2EQ9NZK7 142 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 FANCMQ8IYD8 2048 aa12.12□□□□□ -0.47
CCDC88C-201ENST00000331194 TEX13DA0A0J9YY54 714 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF729A6NN14 1252 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 C2orf74A8MZ97 194 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 PNPP00491 289 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 MELTFP08582 738 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 NME1P15531 152 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 AGAP20933 346 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 SPOCK1Q08629 439 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 PMPCAQ10713 525 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 CNKSR3Q6P9H4 555 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 OR51F2Q8NH61 342 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF563Q8TA94 476 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms