RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DCAF13Q9NV06 445 aaKnown RBP16.61■□□□□ 0.25
LIME1-201ENST00000309546 SIGLEC7Q9Y286 467 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 GRIP1Q9Y3R0 1128 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 TANC2Q9HCD6 1990 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 ZSCAN5BA6NJL1 495 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 SOCS2O14508 198 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 SGCEO43556 437 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 TIMM8AO60220 97 aaPredicted RBP16.6■□□□□ 0.25
LIME1-201ENST00000309546 SLC16A7O60669 478 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 OMPP47874 163 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 LMO4P61968 165 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 KRT72Q14CN4 511 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 FAM209AQ5JX71 171 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 SHQ1Q6PI26 577 aaKnown RBP16.6■□□□□ 0.25
LIME1-201ENST00000309546 ZNF771Q7L3S4 317 aaPredicted RBP16.6■□□□□ 0.25
LIME1-201ENST00000309546 CPLX4Q7Z7G2 160 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 C1orf174Q8IYL3 243 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 ELMOD3Q96FG2 381 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 LRRC37BQ96QE4 947 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 ZNF665Q9H7R5 613 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 MSL2Q9HCI7 577 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 CYSLTR2Q9NS75 346 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 WIPI2Q9Y4P8 454 aa16.6■□□□□ 0.25
LIME1-201ENST00000309546 UNC119BA6NIH7 251 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 IMPA2O14732 288 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 TCF21O43680 179 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 AHCYL1O43865 530 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 ICMTO60725 284 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 PTP4A3O75365 173 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 SDHAP31040 664 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 SEC23BQ15437 767 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 LIPNQ5VXI9 398 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 GPR139Q6DWJ6 353 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 THSD4Q6ZMP0 1018 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 CCL17Q92583 94 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 TIMD4Q96H15 378 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 WACQ9BTA9 647 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 EGLN1Q9GZT9 426 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 METTL17Q9H7H0 456 aaPredicted RBP16.59■□□□□ 0.25
LIME1-201ENST00000309546 NRIP3Q9NQ35 241 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 PLEK2Q9NYT0 353 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 POLR1DQ9Y2S0 133 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 IER3IP1Q9Y5U9 82 aa16.59■□□□□ 0.25
LIME1-201ENST00000309546 H3BSA7 217 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 SNX3O60493 162 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 KHDRBS3O75525 346 aaKnown RBP16.58■□□□□ 0.24
LIME1-201ENST00000309546 COX5BP10606 129 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 GSTM3P21266 225 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 LIPAP38571 399 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 CENPAP49450 140 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 SPIBQ01892 262 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 AQP6Q13520 282 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 ZMAT1Q5H9K5 638 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 C1orf94Q6P1W5 598 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 VASH1Q7L8A9 365 aaPredicted RBP16.58■□□□□ 0.24
LIME1-201ENST00000309546 RFLNBQ8N5W9 214 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 FANK1Q8TC84 345 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 SLC7A6Q92536 515 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 RAB1CQ92928 201 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 RAB39BQ96DA2 213 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 C7orf34Q96L11 122 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 GPX7Q96SL4 187 aaPredicted RBP16.58■□□□□ 0.24
LIME1-201ENST00000309546 POFUT1Q9H488 388 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 ASH2LQ9UBL3 628 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 CGGBP1Q9UFW8 167 aaPredicted RBP16.58■□□□□ 0.24
LIME1-201ENST00000309546 METRNQ9UJH8 293 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 COA3Q9Y2R0 106 aaPredicted RBP16.58■□□□□ 0.24
LIME1-201ENST00000309546 STAB1Q9NY15 2570 aa16.58■□□□□ 0.24
LIME1-201ENST00000309546 ISPDA4D126 451 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 ATP8B1O43520 1251 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 MPZL1O95297 269 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 PPP1R3DO95685 299 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 ITGA2P17301 1181 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 RPS6KA3P51812 740 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 FXYD6P3P58550 94 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 MTX3Q5HYI7 312 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 FAHD2BQ6P2I3 314 aaPredicted RBP16.57■□□□□ 0.24
LIME1-201ENST00000309546 DPY19L2P2Q6ZN68 376 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 PTCHD4Q6ZW05 846 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.57■□□□□ 0.24
LIME1-201ENST00000309546 ADCK1Q86TW2 530 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 GLB1L2Q8IW92 636 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 NPEPL1Q8NDH3 523 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 FAHD2AQ96GK7 314 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 GAL3ST1Q99999 423 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 NUAK2Q9H093 628 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 OCEL1Q9H607 264 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 VSX1Q9NZR4 365 aaPredicted RBP16.57■□□□□ 0.24
LIME1-201ENST00000309546 MAGEL2Q9UJ55 1249 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 ZDHHC8Q9ULC8 765 aa16.57■□□□□ 0.24
LIME1-201ENST00000309546 TRAV20A0A0B4J274 112 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 GADD45GO95257 159 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 ANPEPP15144 967 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 TNFAIP6P98066 277 aaPredicted RBP16.56■□□□□ 0.24
LIME1-201ENST00000309546 PSG7Q13046 419 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 SPRNQ5BIV9 151 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 ACSM5Q6NUN0 579 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 SMARCD3Q6STE5 483 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 ZER1Q7Z7L7 766 aa16.56■□□□□ 0.24
LIME1-201ENST00000309546 PYURFQ96I23 114 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms