RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MUC6Q6W4X9 2439 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 IGHA1P01876 353 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 FCER2P06734 321 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 EIF2B2P49770 351 aaKnown RBP10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ARL6IP1Q15041 203 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 CTF1Q16619 201 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 LYPD4Q6UWN0 246 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF782Q6ZMW2 699 aaPredicted RBP10.35□□□□□ -0.75
VPS4A-201ENST00000254950 CENPSQ8N2Z9 138 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ABCG5Q9H222 651 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SLC22A13Q9Y226 551 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ZFHX2Q9C0A1 2572 aaPredicted RBP10.35□□□□□ -0.75
VPS4A-201ENST00000254950 GPANK1O95872 356 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SNRPBP14678 240 aaKnown RBP10.35□□□□□ -0.75
VPS4A-201ENST00000254950 NKAPLQ5M9Q1 402 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 DEGS2Q6QHC5 323 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 TMEM251Q8N6I4 163 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SUMF1Q8NBK3 374 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 FNDC9Q8TBE3 224 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SLC25A46Q96AG3 418 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SORCS2Q96PQ0 1159 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 UCN2Q96RP3 112 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 NELFAQ9H3P2 528 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 TAS2R5Q9NYW4 299 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 KLF4O43474 513 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 CSN2P05814 226 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ALOX5APP20292 161 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 C4BPBP20851 252 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 THBS2P35442 1172 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 DOK3Q7L591 496 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SERPINA12Q8IW75 414 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 RAB40AQ8WXH6 277 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 PIGCQ92535 297 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF426Q9BUY5 554 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 RBM38Q9H0Z9 239 aaKnown RBP10.35□□□□□ -0.75
VPS4A-201ENST00000254950 WDR87Q6ZQQ6 2873 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 A0A096LPE4 126 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 FAM230AA0A1W2PPH8 454 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 A0A1W2PPZ6 126 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 TXNDC12O95881 172 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 TGM4P49221 684 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ETFDHQ16134 617 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 CARTPTQ16568 116 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF584Q8IVC4 421 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 RDH10Q8IZV5 341 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 OR13C5Q8NGS8 318 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 SYNPRQ8TBG9 265 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 PARD6AQ9NPB6 346 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 QPCTLQ9NXS2 382 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 PROCRQ9UNN8 238 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 CLDN16Q9Y5I7 305 aa10.35□□□□□ -0.75
VPS4A-201ENST00000254950 RALGAPA1Q6GYQ0 2036 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ADAM11O75078 769 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 HLA-DOBP13765 273 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 UQCRC1P31930 480 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ARR3P36575 388 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 UCNP55089 124 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 LTBQ06643 244 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 IRF3Q14653 427 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CDONQ4KMG0 1287 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ADPRHL1Q8NDY3 354 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 RNASE11Q8TAA1 199 aaKnown RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 TNFAIP8L1Q8WVP5 186 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ING3Q9NXR8 418 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 MYEF2Q9P2K5 600 aaKnown RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 LRP12Q9Y561 859 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 H3BUI4 141 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CRTAPO75718 401 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 HTR3BO95264 441 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ONECUT2O95948 504 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 BMP4P12644 408 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PRKACBP22694 351 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PRSS3P35030 304 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 TGFBR1P36897 503 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ATP1B3P54709 279 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CLDN12P56749 244 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 SNTB2Q13425 540 aaKnown RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 SSX1Q16384 188 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ELFN2Q5R3F8 820 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 METAP1DQ6UB28 335 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PGAP1Q75T13 922 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 AKAP14Q86UN6 197 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 LAX1Q8IWV1 398 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 NKAIN3Q8N8D7 197 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 OR52H1Q8NGJ2 320 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF845Q96IR2 970 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 FUZQ9BT04 418 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 MED28Q9H204 178 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 DLL1O00548 723 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PLPP2O43688 288 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 UPK1BO75841 260 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CD3GP09693 182 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 GTF2F2P13984 249 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 FGF9P31371 208 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PTGS2P35354 604 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CLDN20P56880 219 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 EGR4Q05215 589 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 SLC22A6Q4U2R8 563 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 FNDC7Q5VTL7 733 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PLCXD3Q63HM9 321 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms