RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TLN1Q9Y490 2541 aaKnown RBP17.73■□□□□ 0.43
CLN3-250ENST00000636839 TRIM64BA6NI03 449 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 CRYABP02511 175 aaKnown RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 NFATC3Q12968 1075 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 RNPS1Q15287 305 aaKnown RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 TEX30Q5JUR7 227 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 C9orf135Q5VTT2 229 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 OR10S1Q8NGN2 331 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 INTS12Q96CB8 462 aaKnown RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 OR8B4Q96RC9 309 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 RNF122Q9H9V4 155 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 EMC3Q9P0I2 261 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 ZNF724A8MTY0 619 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 RER1O15258 196 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 PSMA1P25786 263 aaKnown RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 GBX2P52951 348 aaPredicted RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 EGR3Q06889 387 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 CEACAM16Q2WEN9 425 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 ZNF324BQ6AW86 544 aaPredicted RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 DMKNQ6E0U4 476 aaPredicted RBP17.72■□□□□ 0.43
CLN3-250ENST00000636839 FAM180AQ6UWF9 173 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 MED12LQ86YW9 2145 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 OR13C5Q8NGS8 318 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 PPP1R14AQ96A00 147 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 MNTQ99583 582 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 PDCD1LG2Q9BQ51 273 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 GPR35Q9HC97 309 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 FBXL3Q9UKT7 428 aa17.72■□□□□ 0.43
CLN3-250ENST00000636839 GTF3C1Q12789 2109 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 KRT8P05787 483 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 BDH1Q02338 343 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 OR7E24Q6IFN5 339 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 P4HA3Q7Z4N8 544 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 OR52N5Q8NH56 324 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 GHSRQ92847 366 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 PGLYRP3Q96LB9 341 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 SH3GL3Q99963 347 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 TTYH2Q9BSA4 534 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 CENPMQ9NSP4 180 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 GDF2Q9UK05 429 aaPredicted RBP17.71■□□□□ 0.43
CLN3-250ENST00000636839 STUB1Q9UNE7 303 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 POLR1DQ9Y2S0 133 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 ZNF175Q9Y473 711 aa17.71■□□□□ 0.43
CLN3-250ENST00000636839 CD8B2A6NJW9 211 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 PNPP00491 289 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 CD8BP10966 210 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 AGTR1P30556 359 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 GABRA5P31644 462 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 ROR2Q01974 943 aaKnown RBP17.71■□□□□ 0.42
CLN3-250ENST00000636839 ENDOGQ14249 297 aaKnown RBP17.71■□□□□ 0.42
CLN3-250ENST00000636839 INAQ16352 499 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 C3P1Q6ZMU1 363 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 C9orf106Q8NAJ2 232 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 SLCO5A1Q9H2Y9 848 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 PRSS50Q9UI38 385 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 LRP12Q9Y561 859 aa17.71■□□□□ 0.42
CLN3-250ENST00000636839 NBEAQ8NFP9 2946 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 OGG1O15527 345 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 PLPP2O43688 288 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 B4GALT1P15291 398 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 CDK5R1Q15078 307 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 KCNMB1Q16558 191 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 ACSF3Q4G176 576 aaPredicted RBP17.7■□□□□ 0.42
CLN3-250ENST00000636839 C22orf42Q6IC83 251 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 TMEM91Q6ZNR0 172 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 FOXL2NBQ6ZUU3 175 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 KRT77Q7Z794 578 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 ZNF679Q8IYX0 411 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 RPRMLQ8N4K4 120 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 ZNF454Q8N9F8 522 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 NELFAQ9H3P2 528 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 TXNL4BQ9NX01 149 aaKnown RBP17.7■□□□□ 0.42
CLN3-250ENST00000636839 FRRS1LQ9P0K9 344 aa17.7■□□□□ 0.42
CLN3-250ENST00000636839 NCOA6Q14686 2063 aaPredicted RBP17.7■□□□□ 0.42
CLN3-250ENST00000636839 TRBV2A0A0J9YWF9 115 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 SULT1C4O75897 302 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 KRT33AO76009 404 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 PATE4P0C8F1 98 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 NR2C1P13056 603 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 MSR1P21757 451 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 MAGEB1P43366 347 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 ROM1Q03395 351 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 ODF4Q2M2E3 257 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 FAM220AQ7Z4H9 259 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 ASB17Q8WXJ9 295 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 SNRNP40Q96DI7 357 aaKnown RBP17.69■□□□□ 0.42
CLN3-250ENST00000636839 SLAMF6Q96DU3 332 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 FBXO17Q96EF6 278 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 MROQ9BYG7 248 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 PPIL3Q9H2H8 161 aaKnown RBP17.69■□□□□ 0.42
CLN3-250ENST00000636839 PARPBPQ9NWS1 579 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 H3BSH0 61 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 PHYHO14832 338 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 DOK2O60496 412 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 GDI2P50395 445 aaKnown RBP17.69■□□□□ 0.42
CLN3-250ENST00000636839 ZNF84P51523 738 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 MFGE8Q08431 387 aaPredicted RBP17.69■□□□□ 0.42
CLN3-250ENST00000636839 SEM1Q6ZVN7 128 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 KCTD20Q7Z5Y7 419 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 RDH10Q8IZV5 341 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms