RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PCNPQ8WW12 178 aaKnown RBP11.46□□□□□ -0.57
LINC00540-203ENST00000631321 SEH1LQ96EE3 360 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 SLC41A2Q96JW4 573 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 VN1R1Q9GZP7 353 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 ATG5Q9H1Y0 275 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 TAS2R4Q9NYW5 299 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 ZNF107Q9UII5 783 aaPredicted RBP11.46□□□□□ -0.57
LINC00540-203ENST00000631321 MEGF11A6BM72 1044 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 F5H5P2 479 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 RAD1O60671 282 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 ISG15P05161 165 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 HTR2CP28335 458 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 S100A11P31949 105 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 TAS2R19P59542 299 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 TDGQ13569 410 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 HLXQ14774 488 aaPredicted RBP11.46□□□□□ -0.58
LINC00540-203ENST00000631321 MISPQ8IVT2 679 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 DEFB119Q8N690 84 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 OR11A1Q9GZK7 315 aa11.46□□□□□ -0.58
LINC00540-203ENST00000631321 MYOZ1Q9NP98 299 aaPredicted RBP11.46□□□□□ -0.58
LINC00540-203ENST00000631321 A0A0C4DFX4 3053 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 IGHV1OR21-1A0A087WYE8 117 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 LOC390937A0A1W2PQ73 354 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 A6NIZ1 184 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 NPIPB13A6NJU9 1138 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 NPIPB4C9JG80 1138 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ACHEP22303 614 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 OR1D5P58170 312 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 RAP1BP61224 184 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 RAP1AP62834 184 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 CFHR1Q03591 330 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 TMUB2Q71RG4 321 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 MDGA2Q7Z553 956 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.45□□□□□ -0.58
LINC00540-203ENST00000631321 GPAT4Q86UL3 456 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 LYPD6Q86Y78 171 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 PLPP5Q8NEB5 264 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 RBPMSQ93062 196 aaKnown RBP11.45□□□□□ -0.58
LINC00540-203ENST00000631321 PTX4Q96A99 478 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 REG4Q9BYZ8 158 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 PCED1AQ9H1Q7 454 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 SLCO5A1Q9H2Y9 848 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 G6PC2Q9NQR9 355 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 GTF2A1LQ9UNN4 478 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 COA3Q9Y2R0 106 aaPredicted RBP11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ALPK2Q86TB3 2170 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 A0A1B0GX78 115 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 hCG_1807616A0A1W2PRN6 198 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 H3BUI4 141 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF35P13682 527 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 FOLR1P15328 257 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ARL4DP49703 201 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 NXPH1P58417 271 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 MELKQ14680 651 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 C1orf100Q5SVJ3 147 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 GLYATL3Q5SZD4 288 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM65Q6PI78 240 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 ADGRE4PQ86SQ3 457 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 NAXDQ8IW45 347 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 CADM4Q8NFZ8 388 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 SLC26A10Q8NG04 563 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 DUSP19Q8WTR2 217 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 UPB1Q9UBR1 384 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 HHLA2Q9UM44 414 aa11.45□□□□□ -0.58
LINC00540-203ENST00000631321 MRPS18BQ9Y676 258 aaKnown RBP11.45□□□□□ -0.58
LINC00540-203ENST00000631321 TP53BP1Q12888 1972 aaPredicted RBP11.45□□□□□ -0.58
LINC00540-203ENST00000631321 MS4A18H0YCH9 400 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 GOSR2O14653 212 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 SIX6O95475 246 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 CD74P04233 296 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 PPP3CBP16298 524 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ARRB1P49407 418 aaPredicted RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 MS4A18Q3C1V0 323 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 DCAF12L2Q5VW00 463 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 DEGS2Q6QHC5 323 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 TSSK4Q6SA08 328 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 PLXDC1Q8IUK5 500 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 CPAMD8Q8IZJ3 1885 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ST7LQ8TDW4 575 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 CCDC107Q8WV48 283 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ASB10Q8WXI3 467 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM234Q8WY98 164 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 SLC25A44Q96H78 314 aaPredicted RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 SLC25A21Q9BQT8 299 aaPredicted RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 POTEKPQ9BYX7 375 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 CHST6Q9GZX3 395 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 EXO5Q9H790 373 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 RHBDD3Q9Y3P4 386 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 BRWD1Q9NSI6 2320 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 MEIS3P1A6NDR6 274 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 MFSD2BA6NFX1 497 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 NUDT21O43809 227 aaKnown RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 RP2O75695 350 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 AQP8O94778 261 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 MPZL1O95297 269 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 PMS2P2O95744 297 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ACSM4P0C7M7 580 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 HLA-DOBP13765 273 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 BAMBIQ13145 260 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 RGS7BPQ6MZT1 257 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms