RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TMEM129A0AVI4 362 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 SNAP29O95721 258 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CCL2P13500 99 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 NOS3P29474 1203 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CRABP1P29762 137 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 APOBEC3AP31941 199 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 THBS4P35443 961 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 PTH2RP49190 550 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 LSM6P62312 80 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 HIST1H3AP68431 136 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CDK5Q00535 292 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 ANK3Q12955 4377 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CRMP1Q14194 572 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 MEP1BQ16820 701 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 HIST2H3PS2Q5TEC6 136 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 TMEM53Q6P2H8 277 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 HIST2H3AQ71DI3 136 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 DEPDC4Q8N2C3 294 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 MUC15Q8N387 334 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 PARP8Q8N3A8 854 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 POM121L2Q96KW2 1035 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 PKP2Q99959 881 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 HCAR1Q9BXC0 346 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 ZNF442Q9H7R0 627 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CMC2Q9NRP2 79 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 MRPL22Q9NWU5 206 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 TMEFF2Q9UIK5 374 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 POU2F3Q9UKI9 436 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 LHFPL6Q9Y693 200 aa16.83■□□□□ 0.28
SHKBP1-221ENST00000599833 CHD3Q12873 2000 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 GPRIN2O60269 458 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 RENP00797 406 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 APEX1P27695 318 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 GRK5P34947 590 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 CDKN1AP38936 164 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 FABP6P51161 128 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 LINC01590Q5TEZ4 76 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 KDM4DQ6B0I6 523 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 KRT80Q6KB66 452 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 LYPD4Q6UWN0 246 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC30A7Q8NEW0 376 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 WACQ9BTA9 647 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 RNF121Q9H920 327 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC25A19Q9HC21 320 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 CBLN4Q9NTU7 201 aa16.82■□□□□ 0.28
SHKBP1-221ENST00000599833 FAM171A2A8MVW0 826 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 ICMTO60725 284 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 CLUP10909 449 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 FCGR1AP12314 374 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 GGT2P36268 569 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 WNT5AP41221 380 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC25A1P53007 311 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 ADAM8P78325 824 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 HSF2Q03933 536 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 SNTB2Q13425 540 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 GINS1Q14691 196 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 CCDC92Q53HC0 331 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 ZNF774Q6NX45 483 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 ATG16L2Q8NAA4 619 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 BDH2Q9BUT1 245 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 SEMA6AQ9H2E6 1030 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 RERGLQ9H628 205 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 TIMM10BQ9Y5J6 103 aa16.81■□□□□ 0.28
SHKBP1-221ENST00000599833 C12orf71A8MTZ7 269 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 G3V2T6 193 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 SMPD2O60906 423 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 MITFO75030 526 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 NDUFS7O75251 213 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 EPHA2P29317 976 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 PYCR1P32322 319 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 PPP2R2BQ00005 443 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 AQP6Q13520 282 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 DAG1Q14118 895 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 EFNB3Q15768 340 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 TMEM255AQ5JRV8 349 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 AGAP6Q5VW22 663 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 TMEM236Q5W0B7 351 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 DNM1P34Q6PK57 102 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 VASH1Q7L8A9 365 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 HIPK1Q86Z02 1210 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 OR9Q1Q8NGQ5 310 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 TEX47Q8TBZ9 253 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 DNAJC9Q8WXX5 260 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 PTP4A1Q93096 173 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 PERPQ96FX8 193 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 CENPNQ96H22 339 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 KCNS3Q9BQ31 491 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 C1orf198Q9H425 327 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 CCNB1IP1Q9NPC3 277 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 PAPOLBQ9NRJ5 636 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 ASH2LQ9UBL3 628 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 KLHL21Q9UJP4 597 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 OAZ3Q9UMX2 235 aa16.8■□□□□ 0.28
SHKBP1-221ENST00000599833 OR6C6A6NF89 314 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 H3BN98 237 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 SURF4O15260 269 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 SYNGR3O43761 229 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 OR4A8P0C604 315 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 STOMP27105 288 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 GLRXP35754 106 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms