RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 RASGEF1BQ0VAM2 473 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 SCGB2A2Q13296 93 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 RNPS1Q15287 305 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 TIMM23BQ5SRD1 257 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF362Q5T0B9 420 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 ARMC4Q5T2S8 1044 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 TMEM236Q5W0B7 351 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 C12orf73Q69YU5 71 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC27A4Q6P1M0 643 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 IGFN1Q86VF2 1251 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 DHRSXQ8N5I4 330 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 OR2T33Q8NG76 320 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 OR9K2Q8NGE7 335 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 OR52L1Q8NGH7 329 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 TFAP2CQ92754 450 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 KATNB1Q9BVA0 655 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 C1QTNF6Q9BXI9 259 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 NDEL1Q9GZM8 345 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 BCO1Q9HAY6 547 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF346Q9UL40 294 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 BAIAP2Q9UQB8 552 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 FLVCR1Q9Y5Y0 555 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 LOC100130705A0A1B0GUX0 176 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 OR5H1A6NKK0 313 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF724A8MTY0 619 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 PPP1R3DO95685 299 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF43P17038 809 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 PCMT1P22061 227 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 EDNRAP25101 427 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 GRK5P34947 590 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 GGT2P36268 569 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 RPL4P36578 427 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 RPS6KA3P51812 740 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 DVL1P1P54792 670 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 RPL27P61353 136 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ERVK-25P63136 954 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 CLEC12AQ5QGZ9 265 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 GPR139Q6DWJ6 353 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 Q6ZT83 130 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 USP51Q70EK9 711 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC35D2Q76EJ3 337 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 WDFY1Q8IWB7 410 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 UEVLDQ8IX04 471 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 IQCF1Q8N6M8 205 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF540Q8NDQ6 660 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF519Q8TB69 540 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 TXNDC15Q96J42 360 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF570Q96NI8 536 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 TSPAN32Q96QS1 320 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ADI1Q9BV57 179 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 IFT27Q9BW83 186 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 LPAR2Q9HBW0 351 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 KLHL9Q9P2J3 617 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 ADAM18Q9Y3Q7 739 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 IER3IP1Q9Y5U9 82 aa12.02□□□□□ -0.49
SHKBP1-218ENST00000598907 A0A1W2PRG6 482 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 GPR171O14626 319 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF432O94892 652 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 IFNGR1P15260 489 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 EPHA1P21709 976 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 IGHV1-2P23083 117 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 SDHAP31040 664 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 NTF4P34130 210 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 CAPGP40121 348 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 HSPA13P48723 471 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 SNRPD2P62316 118 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 POU3F1Q03052 451 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 TTC23Q5W5X9 447 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 GPAT4Q86UL3 456 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 GLCCI1Q86VQ1 547 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF555Q8NEP9 628 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 OR6X1Q8NH79 312 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ASB10Q8WXI3 467 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 TMEM45BQ96B21 275 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 Q96M85 177 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ERMAPQ96PL5 475 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF385AQ96PM9 386 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 JMJD8Q96S16 334 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 DDOQ99489 341 aa12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF184Q99676 751 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 MYOZ1Q9NP98 299 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-218ENST00000598907 SURF4O15260 269 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 LILRA1O75019 489 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 BCL10O95999 233 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 HMGN1P05114 100 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 YES1P07947 543 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 APOBEC3AP31941 199 aaPredicted RBP12□□□□□ -0.49
SHKBP1-218ENST00000598907 OR3A2P47893 321 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 DAP3P51398 398 aaKnown RBP12□□□□□ -0.49
SHKBP1-218ENST00000598907 MYBPC1Q00872 1141 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 C1DQ13901 141 aaKnown RBP12□□□□□ -0.49
SHKBP1-218ENST00000598907 FAM205BPQ63HN1 556 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 HPS1Q92902 700 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF775Q96BV0 537 aaPredicted RBP12□□□□□ -0.49
SHKBP1-218ENST00000598907 MRPL13Q9BYD1 178 aaKnown RBP12□□□□□ -0.49
SHKBP1-218ENST00000598907 CMC2Q9NRP2 79 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 MED29Q9NX70 200 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 GRHPRQ9UBQ7 328 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 RAB26Q9ULW5 256 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 RCE1Q9Y256 329 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms