RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SVOPLQ8N434 492 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 TEX29Q8N6K0 151 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 CCDC197Q8NCU1 140 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 NPEPL1Q8NDH3 523 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 NABP1Q96AH0 204 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 MS4A3Q96HJ5 214 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 ZNF570Q96NI8 536 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 DCLRE1CQ96SD1 692 aaKnown RBP9.02□□□□□ -0.97
LIG3-212ENST00000590181 BEX2Q9BXY8 128 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 CHODLQ9H9P2 273 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 SEC61A2Q9H9S3 476 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 TBCCD1Q9NVR7 557 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 VSX1Q9NZR4 365 aaPredicted RBP9.02□□□□□ -0.97
LIG3-212ENST00000590181 RHCGQ9UBD6 479 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 ZDHHC8Q9ULC8 765 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 PRPF19Q9UMS4 504 aaKnown RBP9.02□□□□□ -0.97
LIG3-212ENST00000590181 UGT2A1Q9Y4X1 527 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 MALRD1Q5VYJ5 2156 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 PLSCR5A0PG75 271 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 UNC119BA6NIH7 251 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 ARPC2O15144 300 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 KHDRBS3O75525 346 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 LCKP06239 509 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 ADH4P08319 380 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 ANPEPP15144 967 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 NCK1P16333 377 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 HNF1AP20823 631 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 SLC6A6P31641 620 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 CENPAP49450 140 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 RGS6P49758 472 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 MYBPC1Q00872 1141 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 PSG4Q00888 419 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 SRSF2Q01130 221 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 SLC3A1Q07837 685 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 SCGB2A2Q13296 93 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 AQP6Q13520 282 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 RIN1Q13671 783 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 TRIM25Q14258 630 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 NKPD1Q17RQ9 610 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 RFX4Q33E94 735 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 SLC36A3Q495N2 470 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 FAM98BQ52LJ0 330 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 MBNL2Q5VZF2 373 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 FAM166AQ6J272 317 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 C1orf94Q6P1W5 598 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 TBPL2Q6SJ96 375 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 MYPOPQ86VE0 399 aaPredicted RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 WDFY1Q8IWB7 410 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 LRRC18Q8N456 261 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 RSRC1Q96IZ7 334 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 POM121L2Q96KW2 1035 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 FOXN4Q96NZ1 517 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 TSPAN32Q96QS1 320 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 FUZQ9BT04 418 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 MRPL37Q9BZE1 423 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 OR2H1Q9GZK4 316 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 HINT3Q9NQE9 182 aaKnown RBP9.01□□□□□ -0.97
LIG3-212ENST00000590181 POLE4Q9NR33 117 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 DUSP13Q9UII6 198 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 KCNG2Q9UJ96 466 aa9.01□□□□□ -0.97
LIG3-212ENST00000590181 A0A1W2PPW3 197 aa9□□□□□ -0.97
LIG3-212ENST00000590181 C17orf100A8MU93 164 aa9□□□□□ -0.97
LIG3-212ENST00000590181 B2RBV5 119 aa9□□□□□ -0.97
LIG3-212ENST00000590181 IFNL4K9M1U5 179 aa9□□□□□ -0.97
LIG3-212ENST00000590181 CDC42EP2O14613 210 aa9□□□□□ -0.97
LIG3-212ENST00000590181 PIP5K1CO60331 668 aa9□□□□□ -0.97
LIG3-212ENST00000590181 SLC2A10O95528 541 aa9□□□□□ -0.97
LIG3-212ENST00000590181 RENP00797 406 aa9□□□□□ -0.97
LIG3-212ENST00000590181 TFP02787 698 aa9□□□□□ -0.97
LIG3-212ENST00000590181 ZNF32P17041 273 aa9□□□□□ -0.97
LIG3-212ENST00000590181 GSTM3P21266 225 aa9□□□□□ -0.97
LIG3-212ENST00000590181 CPT2P23786 658 aa9□□□□□ -0.97
LIG3-212ENST00000590181 GPR4P46093 362 aa9□□□□□ -0.97
LIG3-212ENST00000590181 ERVK-25P63136 954 aa9□□□□□ -0.97
LIG3-212ENST00000590181 GLO1Q04760 184 aa9□□□□□ -0.97
LIG3-212ENST00000590181 TSPAN31Q12999 210 aa9□□□□□ -0.97
LIG3-212ENST00000590181 ECH1Q13011 328 aa9□□□□□ -0.97
LIG3-212ENST00000590181 TOP3AQ13472 1001 aaPredicted RBP9□□□□□ -0.97
LIG3-212ENST00000590181 KRR1Q13601 381 aaKnown RBP9□□□□□ -0.97
LIG3-212ENST00000590181 TSEN54Q7Z6J9 526 aaKnown RBP9□□□□□ -0.97
LIG3-212ENST00000590181 DHFR2Q86XF0 187 aa9□□□□□ -0.97
LIG3-212ENST00000590181 ZDHHC21Q8IVQ6 265 aa9□□□□□ -0.97
LIG3-212ENST00000590181 GJC3Q8NFK1 279 aa9□□□□□ -0.97
LIG3-212ENST00000590181 OR5L1Q8NGL2 311 aa9□□□□□ -0.97
LIG3-212ENST00000590181 OR13C2Q8NGS9 318 aa9□□□□□ -0.97
LIG3-212ENST00000590181 FGFBP3Q8TAT2 258 aa9□□□□□ -0.97
LIG3-212ENST00000590181 GNPDA2Q8TDQ7 276 aa9□□□□□ -0.97
LIG3-212ENST00000590181 NSMAFQ92636 917 aa9□□□□□ -0.97
LIG3-212ENST00000590181 C1orf159Q96HA4 380 aa9□□□□□ -0.97
LIG3-212ENST00000590181 FAM46AQ96IP4 442 aaKnown RBP9□□□□□ -0.97
LIG3-212ENST00000590181 EGLN1Q9GZT9 426 aa9□□□□□ -0.97
LIG3-212ENST00000590181 SHARPINQ9H0F6 387 aa9□□□□□ -0.97
LIG3-212ENST00000590181 DECR2Q9NUI1 292 aa9□□□□□ -0.97
LIG3-212ENST00000590181 ARL8BQ9NVJ2 186 aa9□□□□□ -0.97
LIG3-212ENST00000590181 BAIAP2Q9UQB8 552 aa9□□□□□ -0.97
LIG3-212ENST00000590181 C5orf49A4QMS7 147 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 SURF4O15260 269 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 WIPF1O43516 503 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 SGCEO43556 437 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 OR10H3O60404 316 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms