RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DCXRQ7Z4W1 244 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 ATCAYQ86WG3 371 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 KLHL36Q8N4N3 616 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 OR10H5Q8NGA6 315 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 MAP6Q96JE9 813 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 OPN3Q9H1Y3 402 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-207ENST00000580002 SLCO1C1Q9NYB5 712 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 MRM2Q9UI43 246 aaKnown RBP22.06■■□□□ 1.12
SHMT1-207ENST00000580002 GRIP1Q9Y3R0 1128 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 SIRT4Q9Y6E7 314 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-207ENST00000580002 PNMA8CA0A1B0GUJ8 204 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 CGAP01215 116 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 NR2C1P13056 603 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 CEACAM8P31997 349 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-207ENST00000580002 TIMP3P35625 211 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 LIPAP38571 399 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 WNT4P56705 351 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 ACTC1P68032 377 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 ACTA1P68133 377 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 MRPL49Q13405 166 aaKnown RBP22.05■■□□□ 1.12
SHMT1-207ENST00000580002 SF3B4Q15427 424 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHMT1-207ENST00000580002 SYT6Q5T7P8 510 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-207ENST00000580002 FBXW9Q5XUX1 488 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 KLHL24Q6TFL4 600 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 CFAP77Q6ZQR2 320 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 KLBQ86Z14 1044 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 OR10S1Q8NGN2 331 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 CDADC1Q9BWV3 514 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 NELFAQ9H3P2 528 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 ASH2LQ9UBL3 628 aa22.05■■□□□ 1.12
SHMT1-207ENST00000580002 A0A096LPE4 126 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 A0A1W2PPZ6 126 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF587BE7ETH6 402 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 IL2RAP01589 272 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ITGA5P08648 1049 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 OR8G3PP0DMU2 310 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 MSR1P21757 451 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 MRPS34P82930 218 aaKnown RBP22.04■■□□□ 1.12
SHMT1-207ENST00000580002 TIGD6Q17RP2 521 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 TEX30Q5JUR7 227 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 LRRN1Q6UXK5 716 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF610Q8N9Z0 462 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ST6GALNAC3Q8NDV1 305 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ST7LQ8TDW4 575 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 RNF166Q96A37 237 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-207ENST00000580002 FBXO17Q96EF6 278 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 OPALINQ96PE5 141 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 BBC3Q96PG8 261 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-207ENST00000580002 MGLLQ99685 303 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 INPP5EQ9NRR6 644 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 CAB39Q9Y376 341 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-207ENST00000580002 POLEQ07864 2286 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 RPL36A-HNRNPH2H7BZ11 118 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 RER1O15258 196 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 IL18BPO95998 194 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 PSMB10P40306 273 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 TSC22D1Q15714 1073 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 CDONQ4KMG0 1287 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 ARMCX4Q5H9R4 360 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 SLC18B1Q6NT16 456 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 OR6K3Q8NGY3 331 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 SNX33Q8WV41 574 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 COG8Q96MW5 612 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 GNG8Q9UK08 70 aa22.04■■□□□ 1.12
SHMT1-207ENST00000580002 TRGV8A0A0C4DH27 118 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 H3BSA7 217 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 RBPJQ06330 500 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 FOXB2Q5VYV0 432 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF813Q6ZN06 617 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF367Q7RTV3 350 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 SKA3Q8IX90 412 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 OR13F1Q8NGS4 319 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 OR52N1Q8NH53 320 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 NAA50Q9GZZ1 169 aaKnown RBP22.03■■□□□ 1.12
SHMT1-207ENST00000580002 VCX3AQ9NNX9 186 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 PLSCR4Q9NRQ2 329 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 ACOXLQ9NUZ1 547 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 MALT1Q9UDY8 824 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 GDF2Q9UK05 429 aaPredicted RBP22.03■■□□□ 1.12
SHMT1-207ENST00000580002 POLR1DQ9Y2S0 133 aa22.03■■□□□ 1.12
SHMT1-207ENST00000580002 CFAP46Q8IYW2 2715 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 A0A0G2JNJ9 132 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 HOXD4P09016 255 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-207ENST00000580002 TSTQ16762 297 aaKnown RBP22.02■■□□□ 1.12
SHMT1-207ENST00000580002 SLC22A24Q8N4F4 322 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 SIAEQ9HAT2 523 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 Q9UFV3 132 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 OSGIN2Q9Y236 505 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 RTTNQ86VV8 2226 aa22.02■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF503-AS2A6NEH8 195 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 A6NHS1 94 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 ABHD16AO95870 558 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 IGHV1-2P23083 117 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 SSX1Q16384 188 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 FAM27BQ5VT28 67 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 PELI1Q96FA3 418 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 IKZF2Q9UKS7 526 aa22.02■■□□□ 1.11
SHMT1-207ENST00000580002 OR6C65A6NJZ3 312 aa22.01■■□□□ 1.11
SHMT1-207ENST00000580002 GUCA1AP43080 201 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-207ENST00000580002 TMPRSS11AQ6ZMR5 421 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms