RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FDCSPQ8NFU4 85 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 OR52N5Q8NH56 324 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 OR10D3Q8NH80 312 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 NEIL3Q8TAT5 605 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TBC1D15Q8TC07 691 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 RPS4Y2Q8TD47 263 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 RNF128Q8TEB7 428 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 NSMAFQ92636 917 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 GHSRQ92847 366 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TMEM54Q969K7 222 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 MCHR2Q969V1 340 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 SLC25A46Q96AG3 418 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PELI1Q96FA3 418 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TXNDC15Q96J42 360 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ADGRG7Q96K78 797 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 CEP19Q96LK0 163 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 UBL7Q96S82 380 aaPredicted RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 NPAS1Q99742 590 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 CENPOQ9BU64 300 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 KRTAP9-2Q9BYQ4 174 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PRRG4Q9BZD6 226 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 SLIRPQ9GZT3 109 aaKnown RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 LDAHQ9H6V9 325 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 EXO5Q9H790 373 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 MOB1AQ9H8S9 216 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ISG20L2Q9H9L3 353 aaKnown RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 MED29Q9NX70 200 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PLA2G3Q9NZ20 509 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 IKZF2Q9UKS7 526 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 COA3Q9Y2R0 106 aaPredicted RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 ZNF175Q9Y473 711 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 KCNMB2Q9Y691 235 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PCNX2A6NKB5 2137 aa7.09□□□□□ -1.28
VPS39-213ENST00000570062 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 MKRN2OSH3BPM6 223 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 FAM229AH3BQW9 127 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GABRPO00591 440 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SMAD9O15198 467 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 ZZEF1O43149 2961 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 DHHO43323 396 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CXCL13O43927 109 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CDRT1O95170 752 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 IGHG3P01860 377 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CRYABP02511 175 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 CD2P06729 351 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 QDPRP09417 244 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 H2BFMP0C1H6 154 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 RFPL3SP0C7P2 107 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 NR4A1P22736 598 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 PTBP1P26599 531 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS39-213ENST00000570062 CD40LGP29965 261 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GDI2P50395 445 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 LHX2P50458 406 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CLDN15P56746 228 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 PCBD1P61457 104 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GRB2P62993 217 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 FABP5Q01469 135 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SLC3A1Q07837 685 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ECH1Q13011 328 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 EIF2B1Q14232 305 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 TP53I3Q53FA7 332 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ACSM3Q53FZ2 586 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SPANXN2Q5MJ10 180 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 TMEM244Q5VVB8 128 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 C22orf42Q6IC83 251 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ZNF704Q6ZNC4 412 aaPredicted RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 FOXL2NBQ6ZUU3 175 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 FCRLAQ7L513 359 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 AAED1Q7RTV5 226 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CEACAM19Q7Z692 300 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 MCEMP1Q8IX19 187 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 C20orf196Q8IYI0 205 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GPR137CQ8N3F9 429 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SYT14Q8NB59 555 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GJC3Q8NFK1 279 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 OR6Q1Q8NGQ2 317 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 OR5AK2Q8NH90 309 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 NDNFQ8TB73 568 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CPT1CQ8TCG5 803 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ZPLD1Q8TCW7 415 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 GPR148Q8TDV2 347 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 RPL3LQ92901 407 aaKnown RBP7.08□□□□□ -1.28
VPS39-213ENST00000570062 TMEM203Q969S6 136 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SARAFQ96BY9 339 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CMTM3Q96MX0 182 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 TSSK2Q96PF2 358 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 OR2M2Q96R28 347 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 TIMP4Q99727 224 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 SH3GL3Q99963 347 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 TMED9Q9BVK6 235 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 LINC00470Q9BZP3 86 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 NELFAQ9H3P2 528 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ZDHHC11Q9H8X9 412 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 CYB5R1Q9UHQ9 305 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ST6GALNAC2Q9UJ37 374 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 ZMIZ1Q9ULJ6 1067 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 B3GNT3Q9Y2A9 372 aa7.08□□□□□ -1.28
VPS39-213ENST00000570062 A0A1B0GVC2 190 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MEGF11A6BM72 1044 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms