RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 ALG12Q9BV10 488 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 IFT27Q9BW83 186 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 OPN3Q9H1Y3 402 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-206ENST00000565990 SLCO5A1Q9H2Y9 848 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 KCNJ16Q9NPI9 418 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 GLTPQ9NZD2 209 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 LSM2Q9Y333 95 aaKnown RBP11.12□□□□□ -0.63
SF3B3-206ENST00000565990 CACNA1CQ13936 2221 aa11.12□□□□□ -0.63
SF3B3-206ENST00000565990 IQCMA0A1B0GVH7 501 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 ARHGEF9O43307 516 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 SERPINI2O75830 405 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 AGFG2O95081 481 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 SOX14O95416 240 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 PPP1R3DO95685 299 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 IGHG1P01857 330 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 RNF224P0DH78 156 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 TRAPPC2P0DI81 140 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 TRAPPC2BP0DI82 140 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 PSMA1P25786 263 aaKnown RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 GRK5P34947 590 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 CDKN2AP42771 156 aaKnown RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 ASCL1P50553 236 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 LGALS3BPQ08380 585 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 MELKQ14680 651 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 THEM4Q5T1C6 240 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 LINGO2Q7L985 606 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 OR52L1Q8NGH7 329 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 TEX47Q8TBZ9 253 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 SSC4DQ8WTU2 575 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 MED18Q9BUE0 208 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 HDHD5Q9BXW7 423 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 NUAK2Q9H093 628 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 GPR35Q9HC97 309 aa11.11□□□□□ -0.63
SF3B3-206ENST00000565990 FGF20Q9NP95 211 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 VSX1Q9NZR4 365 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 DIMT1Q9UNQ2 313 aaKnown RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 GCN1Q92616 2671 aaKnown RBP11.11□□□□□ -0.63
SF3B3-206ENST00000565990 SPTBN1Q01082 2364 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 TEX13CA0A0J9YWL9 993 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 PRSS37A4D1T9 235 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 ZNF670-ZNF695F2Z2N8 137 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 H3BN98 237 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 IL1AP01583 271 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 HMGN1P05114 100 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 DBTP11182 482 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 HIST1H1CP16403 213 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 COX5AP20674 150 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 IGHV1-2P23083 117 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 PTBP1P26599 531 aaKnown RBP eCLIP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 SPHARQ15513 63 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 NDUFA5Q16718 116 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 MESTQ5EB52 335 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 CLEC12AQ5QGZ9 265 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 SFRP5Q5T4F7 317 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 SLC25A47Q6Q0C1 308 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 STAC2Q6ZMT1 411 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 ZNF627Q7L945 461 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 PARP16Q8N5Y8 322 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 NANOGP1Q8N7R0 232 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 NPEPL1Q8NDH3 523 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 RNASE6Q93091 150 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 MCHR2Q969V1 340 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 RASD2Q96D21 266 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 RBP7Q96R05 134 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 TEX12Q9BXU0 123 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 OR10A4Q9H209 315 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 ASB6Q9NWX5 421 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 NDUFB11Q9NX14 153 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 UPB1Q9UBR1 384 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 AASSQ9UDR5 926 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 SSR3Q9UNL2 185 aa11.1□□□□□ -0.63
SF3B3-206ENST00000565990 EXOSC1Q9Y3B2 195 aaKnown RBP11.1□□□□□ -0.63
SF3B3-206ENST00000565990 DOPEY1Q5JWR5 2465 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 TMEM129A0AVI4 362 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 SLC22A23A1A5C7 686 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 NKX2-6A6NCS4 301 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 OR6C68A6NDL8 312 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 ATP6V1G1O75348 118 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 RAB36O95755 333 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 IGHV3-9P01782 118 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 QDPRP09417 244 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 PSMB1P20618 241 aaKnown RBP11.09□□□□□ -0.63
SF3B3-206ENST00000565990 GALP22466 123 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 POU1F1P28069 291 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 MPGP29372 298 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 CD79BP40259 229 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 CSNK1A1P48729 337 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 EIF2B2P49770 351 aaKnown RBP11.09□□□□□ -0.63
SF3B3-206ENST00000565990 RORCP51449 518 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 FOXG1P55316 489 aaPredicted RBP11.09□□□□□ -0.63
SF3B3-206ENST00000565990 FAM27E3Q08E93 113 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 RAB40BQ12829 278 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 FAPQ12884 760 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 MED22Q15528 200 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 TSTQ16762 297 aaKnown RBP11.09□□□□□ -0.63
SF3B3-206ENST00000565990 PGGHGQ32M88 737 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 C10orf128Q5T292 105 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 CARD17Q5XLA6 110 aa11.09□□□□□ -0.63
SF3B3-206ENST00000565990 ABHD12BQ7Z5M8 362 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms