RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TROVE2P10155 538 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLN3-216ENST00000565316 H2AFXP16104 143 aaPredicted RBP14.51□□□□□ -0.09
CLN3-216ENST00000565316 GATA3P23771 443 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 IFNA8P32881 189 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 RAP1BP61224 184 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 PPP1CBP62140 327 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 RAP1AP62834 184 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 PRKCDQ05655 676 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 ENDOGQ14249 297 aaKnown RBP14.51□□□□□ -0.09
CLN3-216ENST00000565316 ZNF774Q6NX45 483 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 NRMQ8IXM6 262 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 OFCC1Q8IZS5 231 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 ABHD4Q8TB40 342 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 FAM216AQ8WUB2 273 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 CCL17Q92583 94 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 TPD52L3Q96J77 140 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 WACQ9BTA9 647 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 EGLN1Q9GZT9 426 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 ZDHHC8Q9ULC8 765 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 WNK2Q9Y3S1 2297 aa14.51□□□□□ -0.09
CLN3-216ENST00000565316 MGAM2Q2M2H8 2515 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 LOC100653049A0A140TA62 436 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 ELOVL7A1L3X0 281 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 FFAR1O14842 300 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 KRT34O76011 436 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 SCG5P05408 212 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 MSR1P21757 451 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 GUCA1AP43080 201 aaPredicted RBP14.5□□□□□ -0.09
CLN3-216ENST00000565316 SLC3A1Q07837 685 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 TRAM2Q15035 370 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 CGB2Q6NT52 195 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 IGFN1Q86VF2 1251 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 RNF113BQ8IZP6 322 aaKnown RBP14.5□□□□□ -0.09
CLN3-216ENST00000565316 LZICQ8WZA0 190 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 C4orf45Q96LM5 186 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 DIRC2Q96SL1 478 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 ELOVL3Q9HB03 270 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 POLE4Q9NR33 117 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 OPN4Q9UHM6 478 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 SNX13Q9Y5W8 968 aa14.5□□□□□ -0.09
CLN3-216ENST00000565316 TRAV27A0A087WT01 109 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 C12orf71A8MTZ7 269 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 SASH3O75995 380 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 FSHBP01225 129 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 COX5BP10606 129 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 TUBG1P23258 451 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 SLC9A3P48764 834 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 ARHGDIAP52565 204 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 CDK5R2Q13319 367 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 SPRNQ5BIV9 151 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 ZMAT1Q5H9K5 638 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 DCAF12L2Q5VW00 463 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 VTCN1Q7Z7D3 282 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 PEG10Q86TG7 708 aaKnown RBP14.49□□□□□ -0.09
CLN3-216ENST00000565316 OAFQ86UD1 273 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 OR51A7Q8NH64 312 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 FNDC11Q9BVV2 318 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 TUBG2Q9NRH3 451 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 FGFR1OP2Q9NVK5 253 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 CMTM6Q9NX76 183 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 AP3M1Q9Y2T2 418 aa14.49□□□□□ -0.09
CLN3-216ENST00000565316 MEGF8Q7Z7M0 2845 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 PPIAL4EA0A075B759 164 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 PPIAL4CA0A0B4J2A2 164 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 TMEM89A2RUT3 159 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 EFCAB9A8MZ26 197 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 PPIAL4DF5H284 164 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 SLC22A2O15244 555 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 AHCYL1O43865 530 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 RGS9O75916 674 aaPredicted RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 PRSS23O95084 383 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 IFNW1P05000 195 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 PPIAL4FP0DN26 164 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 YAP1P46937 504 aaKnown RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 PSG7Q13046 419 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 MTX3Q5HYI7 312 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 ARL9Q6T311 187 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 ZER1Q7Z7L7 766 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 OR13C2Q8NGS9 318 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 NANPQ8TBE9 248 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 ACOT11Q8WXI4 607 aaPredicted RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 JMJD8Q96S16 334 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 GAL3ST1Q99999 423 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 RBM4Q9BWF3 364 aaKnown RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 SUCNR1Q9BXA5 334 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 MSL2Q9HCI7 577 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 TBCCD1Q9NVR7 557 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 ARGLU1Q9NWB6 273 aaPredicted RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 GMPR2Q9P2T1 348 aaKnown RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 RHCGQ9UBD6 479 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 NDRG4Q9ULP0 352 aaKnown RBP14.48□□□□□ -0.09
CLN3-216ENST00000565316 CAPN7Q9Y6W3 813 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 PKD1L1Q8TDX9 2849 aa14.48□□□□□ -0.09
CLN3-216ENST00000565316 A0A087WUU8 490 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 A0A1W2PPL8 197 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 TRIM77I1YAP6 450 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 J3KTA2 159 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 ZNF26P17031 533 aaPredicted RBP14.47□□□□□ -0.09
CLN3-216ENST00000565316 ADRA2CP18825 462 aa14.47□□□□□ -0.09
CLN3-216ENST00000565316 ACTG1P63261 375 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms