RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MEIOBQ8N635 442 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 MDS2Q8NDY4 140 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 NSMAFQ92636 917 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 GHSRQ92847 366 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 BORCS5Q969J3 196 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 SMIM19Q96E16 107 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 PELI1Q96FA3 418 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 CEP19Q96LK0 163 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 EMC6Q9BV81 110 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 C6orf62Q9GZU0 229 aaPredicted RBP7.94□□□□□ -1.14
VPS39-207ENST00000563692 NXF2Q9GZY0 626 aaKnown RBP7.94□□□□□ -1.14
VPS39-207ENST00000563692 KCNG2Q9UJ96 466 aa7.94□□□□□ -1.14
VPS39-207ENST00000563692 SPENQ96T58 3664 aaKnown RBP7.94□□□□□ -1.14
VPS39-207ENST00000563692 PRRC2CQ9Y520 2896 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 NAV2Q8IVL1 2488 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 WIPF3A6NGB9 483 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 CD8B2A6NJW9 211 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 TRAF3IP2O43734 574 aaPredicted RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 ZNF254O75437 659 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ARL6IP5O75915 188 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ACTL6AO96019 429 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 RNF224P0DH78 156 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 PGA4P0DJD7 388 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 PGA3P0DJD8 388 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 CD8BP10966 210 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ZNF24P17028 368 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 CFL1P23528 166 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 MYL9P24844 172 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 SDC2P34741 201 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 EIF1AXP47813 144 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 MTNR1BP49286 362 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 MEOX1P50221 254 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 GDI2P50395 445 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 BMXP51813 675 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 GFRA1P56159 465 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 PPIAP62937 165 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 PMP22Q01453 160 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 RASGEF1BQ0VAM2 473 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 DBPQ10586 325 aaPredicted RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 EIF2B1Q14232 305 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 CDK5R1Q15078 307 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ETFDHQ16134 617 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ACSM3Q53FZ2 586 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 YIF1BQ5BJH7 314 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 LIPNQ5VXI9 398 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 C16orf87Q6PH81 154 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 DEGS2Q6QHC5 323 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 LYPD4Q6UWN0 246 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 CHMP1BQ7LBR1 199 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 TPRA1Q86W33 373 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 ZNF679Q8IYX0 411 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 NOXO1Q8NFA2 376 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 OR9K2Q8NGE7 335 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 OR6N1Q8NGY5 312 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 OR2AJ1Q8NGZ0 328 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 NEIL3Q8TAT5 605 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 THRSPQ92748 146 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 CPNE4Q96A23 557 aaPredicted RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 SLC25A46Q96AG3 418 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 SCMH1Q96GD3 660 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 OR8B4Q96RC9 309 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 TTTY12Q9BZ98 90 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 COMMD4Q9H0A8 199 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 TPK1Q9H3S4 243 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 SEC61A2Q9H9S3 476 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 PALMDQ9NP74 551 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ACKR4Q9NPB9 350 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ACOXLQ9NUZ1 547 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 KLHL13Q9P2N7 655 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 MRM2Q9UI43 246 aaKnown RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 ST6GALNAC2Q9UJ37 374 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 ZNF281Q9Y2X9 895 aa7.93□□□□□ -1.14
VPS39-207ENST00000563692 SIRT4Q9Y6E7 314 aaPredicted RBP7.93□□□□□ -1.14
VPS39-207ENST00000563692 FAM166BA8MTA8 275 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZNF879B4DU55 563 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZNF814B7Z6K7 855 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 CCL21O00585 134 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 TFECO14948 347 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 MAGEB4O15481 346 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 CXCL13O43927 109 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 SLC19A2O60779 497 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZG16O60844 167 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 GLSO94925 669 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 RPP14O95059 124 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 SYNGR4O95473 234 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 QDPRP09417 244 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 INHBBP09529 407 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 OR8G3PP0DMU2 310 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ABOP16442 354 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 MAPK3P27361 379 aaPredicted RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 PSMB10P40306 273 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 OPRL1P41146 370 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 CSNK1A1P48729 337 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 STARP49675 285 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZNF84P51523 738 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 RIDAP52758 137 aaKnown RBP7.92□□□□□ -1.14
VPS39-207ENST00000563692 CLDN15P56746 228 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 CLDN20P56880 219 aa7.92□□□□□ -1.14
VPS39-207ENST00000563692 ZNF45Q02386 682 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms