RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZNF774Q6NX45 483 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 DPY19L2P2Q6ZN68 376 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 ALDH16A1Q8IZ83 802 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 ZNF786Q8N393 782 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 GPX7Q96SL4 187 aaPredicted RBP13.43□□□□□ -0.26
VPS39-203ENST00000561797 SYT4Q9H2B2 425 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 ACTR3BQ9P1U1 418 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 EIF3KQ9UBQ5 218 aaKnown RBP13.43□□□□□ -0.26
VPS39-203ENST00000561797 TMCC3Q9ULS5 477 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 IGHV4-61A0A0C4DH41 118 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 C12orf71A8MTZ7 269 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 AHCYL1O43865 530 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 KHDRBS3O75525 346 aaKnown RBP13.42□□□□□ -0.26
VPS39-203ENST00000561797 PPP1R3DO95685 299 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 HPXP02790 462 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 IGHV4-31P0DP07 118 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 APEHP13798 732 aaKnown RBP13.42□□□□□ -0.26
VPS39-203ENST00000561797 ZNF250P15622 560 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 ZNF16P17020 682 aaPredicted RBP13.42□□□□□ -0.26
VPS39-203ENST00000561797 WNT5AP41221 380 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 SPATA46Q5T0L3 261 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 C6orf52Q5T4I8 152 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 PTCHD4Q6ZW05 846 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 PRIMA1Q86XR5 153 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 ZNF101Q8IZC7 436 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 ZNF540Q8NDQ6 660 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 FANK1Q8TC84 345 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 ERMAPQ96PL5 475 aaPredicted RBP13.42□□□□□ -0.26
VPS39-203ENST00000561797 GPR160Q9UJ42 338 aa13.42□□□□□ -0.26
VPS39-203ENST00000561797 COA3Q9Y2R0 106 aaPredicted RBP13.42□□□□□ -0.26
VPS39-203ENST00000561797 SONP18583 2426 aaKnown RBP13.41□□□□□ -0.26
VPS39-203ENST00000561797 LRP5LA4QPB2 252 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 MPZL1O95297 269 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 T-ENOLP0DO92 83 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 CALB2P22676 271 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 COL8A2P25067 703 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 GIFP27352 417 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 CDKN2AP42771 156 aaKnown RBP13.41□□□□□ -0.26
VPS39-203ENST00000561797 CENPAP49450 140 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 GLO1Q04760 184 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 RFX4Q33E94 735 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 ELFN2Q5R3F8 820 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 DHFR2Q86XF0 187 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 GNPDA2Q8TDQ7 276 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 SNX33Q8WV41 574 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 SAMD8Q96LT4 415 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 NUAK2Q9H093 628 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 OR52D1Q9H346 318 aa13.41□□□□□ -0.26
VPS39-203ENST00000561797 IGLV3-9A0A075B6K5 115 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 DOK2O60496 412 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 TXNDC12O95881 172 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 NGFP01138 241 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 ZNF23P17027 643 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 FPR3P25089 353 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 GCH1P30793 250 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 SLC6A6P31641 620 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 IFNGR2P38484 337 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 MAGEB1P43366 347 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 GZMKP49863 264 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 MS4A2Q01362 244 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 TRIM25Q14258 630 aaKnown RBP13.4□□□□□ -0.26
VPS39-203ENST00000561797 ZNF718Q3SXZ3 478 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 TMEM154Q6P9G4 183 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 SYT9Q86SS6 491 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 ADCK1Q86TW2 530 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 ARHGAP24Q8N264 748 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 ABHD4Q8TB40 342 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 SLC25A40Q8TBP6 338 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 GTF3AQ92664 365 aaKnown RBP13.4□□□□□ -0.26
VPS39-203ENST00000561797 TSSK2Q96PF2 358 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 IFT27Q9BW83 186 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 HINT3Q9NQE9 182 aaKnown RBP13.4□□□□□ -0.26
VPS39-203ENST00000561797 SLCO1C1Q9NYB5 712 aa13.4□□□□□ -0.26
VPS39-203ENST00000561797 VSX1Q9NZR4 365 aaPredicted RBP13.4□□□□□ -0.26
VPS39-203ENST00000561797 TANC2Q9HCD6 1990 aa13.4□□□□□ -0.27
VPS39-203ENST00000561797 TCRBV5S2A0A599 114 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 C17orf100A8MU93 164 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 KIAA1324LA8MWY0 1029 aaPredicted RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 TNFRSF11BO00300 401 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 SGCEO43556 437 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 KRT36O76013 467 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 NCR1O76036 304 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 GPANK1O95872 356 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 MPV17P39210 176 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 HTR5AP47898 357 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 GSSP48637 474 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 PPP1CBP62140 327 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 CCL8P80075 99 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 SCRN3Q0VDG4 424 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 DBPQ10586 325 aaPredicted RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 PPP1R8Q12972 351 aaKnown RBP13.39□□□□□ -0.27
VPS39-203ENST00000561797 RIN1Q13671 783 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 TRIP10Q15642 601 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 MTX3Q5HYI7 312 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 C1orf94Q6P1W5 598 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 PGBD2Q6P3X8 592 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 LEG1Q6P5S2 330 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 UNQ6126/PRO20091Q6UXV3 157 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 RFPL4BQ6ZWI9 263 aa13.39□□□□□ -0.27
VPS39-203ENST00000561797 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms