RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TMEM33P57088 247 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 MRPS11P82912 194 aaKnown RBP16.14■□□□□ 0.17
VPS35-202ENST00000561713 ENDOGQ14249 297 aaKnown RBP16.14■□□□□ 0.17
VPS35-202ENST00000561713 SPRNQ5BIV9 151 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 USP43Q70EL4 1123 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 LZICQ8WZA0 190 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 OR2J1Q9GZK6 312 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 SAP30LQ9HAJ7 183 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 MRGBPQ9NV56 204 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 GPR160Q9UJ42 338 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 CDC42EP2O14613 210 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 PNPP00491 289 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 SERPINA1P01009 418 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 NGFP01138 241 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 IGHV1-46P01743 117 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 SCG5P05408 212 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 COX4I1P13073 169 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 ZNF26P17031 533 aaPredicted RBP16.13■□□□□ 0.17
VPS35-202ENST00000561713 SLC9A3P48764 834 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 GSK3BP49841 420 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 ZNF81P51508 661 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 TRAM2Q15035 370 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 PCGF3Q3KNV8 242 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 IFI44LQ53G44 452 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 ZNF730Q6ZMV8 503 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 ARPINQ7Z6K5 226 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 TREML1Q86YW5 311 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 GEMIN6Q8WXD5 167 aaKnown RBP16.13■□□□□ 0.17
VPS35-202ENST00000561713 MARS2Q96GW9 593 aaKnown RBP16.13■□□□□ 0.17
VPS35-202ENST00000561713 POFUT1Q9H488 388 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 ZNF665Q9H7R5 613 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 WIPI2Q9Y4P8 454 aa16.13■□□□□ 0.17
VPS35-202ENST00000561713 A0A087WUU8 490 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 TRAV20A0A0B4J274 112 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 GSTA4O15217 222 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 PRSS23O95084 383 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 IGHV3-13P01766 116 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 NR2C1P13056 603 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 GCH1P30793 250 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 PPP1CBP62140 327 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 PRKCDQ05655 676 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 MESTQ5EB52 335 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 FAM27BQ5VT28 67 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 FOXL2NBQ6ZUU3 175 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 OAFQ86UD1 273 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 KLF14Q8TD94 323 aaPredicted RBP16.12■□□□□ 0.17
VPS35-202ENST00000561713 Q96M85 177 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 RBM4Q9BWF3 364 aaKnown RBP16.12■□□□□ 0.17
VPS35-202ENST00000561713 G6PC2Q9NQR9 355 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 DECR2Q9NUI1 292 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 DCAF16Q9NXF7 216 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 TGP01266 2768 aa16.12■□□□□ 0.17
VPS35-202ENST00000561713 GMNCA6NCL1 334 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 CLDN25C9JDP6 229 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 IMPA2O14732 288 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 CST2P09228 141 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 MSR1P21757 451 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 IFNA8P32881 189 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 RPL4P36578 427 aaKnown RBP16.11■□□□□ 0.17
VPS35-202ENST00000561713 CRYBB2P43320 205 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 NUDT2P50583 147 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 MMP15P51511 669 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 TAF11Q15544 211 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 ZNF718Q3SXZ3 478 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 FAM205BPQ63HN1 556 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 CBLL1Q75N03 491 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 ACOT11Q8WXI4 607 aaPredicted RBP16.11■□□□□ 0.17
VPS35-202ENST00000561713 RASD2Q96D21 266 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 FAM46AQ96IP4 442 aaKnown RBP16.11■□□□□ 0.17
VPS35-202ENST00000561713 RBP7Q96R05 134 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 MSL2Q9HCI7 577 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 POLE4Q9NR33 117 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 NKIRAS2Q9NYR9 191 aa16.11■□□□□ 0.17
VPS35-202ENST00000561713 EIF3KQ9UBQ5 218 aaKnown RBP16.11■□□□□ 0.17
VPS35-202ENST00000561713 A6NIZ1 184 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 SLC22A2O15244 555 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 DEAF1O75398 565 aaPredicted RBP16.1■□□□□ 0.17
VPS35-202ENST00000561713 MPZL1O95297 269 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 MT-ND5P03915 603 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 RAP1BP61224 184 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 RAP1AP62834 184 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 AWAT1Q58HT5 328 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 MBOAT2Q6ZWT7 520 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 FKBP9P1Q75LS8 142 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 TSEN54Q7Z6J9 526 aaKnown RBP16.1■□□□□ 0.17
VPS35-202ENST00000561713 RP9Q8TA86 221 aaKnown RBP16.1■□□□□ 0.17
VPS35-202ENST00000561713 FAM162AQ96A26 154 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 ZNF570Q96NI8 536 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 JMJD8Q96S16 334 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 CCDC134Q9H6E4 229 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 IL20RAQ9UHF4 553 aa16.1■□□□□ 0.17
VPS35-202ENST00000561713 TEX13CA0A0J9YWL9 993 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 PLSCR5A0PG75 271 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 ISPDA4D126 451 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 DOK2O60496 412 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 IGHV2-5P01817 119 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 CTLA4P16410 223 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 ADRA2CP18825 462 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 HTR5AP47898 357 aa16.09■□□□□ 0.17
VPS35-202ENST00000561713 HFEQ30201 348 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms