RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRELID3BQ9Y3B1 194 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PEX16Q9Y5Y5 336 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FKBP7Q9Y680 259 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 HSPE1-MOB4S4R3N1 261 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MYH11P35749 1972 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MTCL1Q9Y4B5 1905 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 LAMB4A4D0S4 1761 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DLEC1Q9Y238 1755 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 RIMS1Q86UR5 1692 aaKnown RBP2.28□□□□□ -2.05
VPS13C-208ENST00000559119 DIP2CQ9Y2E4 1556 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PXDNQ92626 1479 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PLIN4Q96Q06 1357 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SCN4AP35499 1836 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 A0A075B6Q4 140 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 LOC100653049A0A140TA62 436 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TCRBV9S1A1TA0A576 114 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 HEATR9A2RTY3 570 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 METTL15A6NJ78 407 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 FAM159BA6NKW6 160 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NPIPA2E9PIF3 369 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 F8W036 122 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CHADO15335 359 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 STX7O15400 261 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NBR2O15453 112 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PRPSAP2O60256 369 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GMDSO60547 372 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PLIN3O60664 434 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 KRT34O76011 436 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SLC22A5O76082 557 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 VAPBO95292 243 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SNAP29O95721 258 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 LDOC1O95751 146 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 IGSF6O95976 241 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 INSP01308 110 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CHRNA1P02708 482 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 FTH1P02794 183 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CALB1P05937 261 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RALAP11233 206 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SPNP16150 400 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NCF2P19878 526 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CRHBPP24387 322 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ADORA1P30542 326 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SPAM1P38567 509 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 MAGEA6P43360 314 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ASMTP46597 345 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RPS9P46781 194 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 YAP1P46937 504 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 QARSP47897 775 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ERFP50548 548 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NUDT2P50583 147 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TPMTP51580 245 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GBX2P52951 348 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 BPIFB3P59826 476 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GMFBP60983 142 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CXCR4P61073 352 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PSME3P61289 254 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SNRPFP62306 86 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RPL10AP62906 217 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RGS1Q08116 209 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CDH17Q12864 832 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 STX5Q13190 355 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ART3Q13508 389 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GRK1Q15835 563 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 NEDD8Q15843 81 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 UBE2SQ16763 222 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CYP51A1Q16850 503 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF404Q494X3 552 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 GPAT3Q53EU6 434 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TEX30Q5JUR7 227 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CLLU1Q5K131 121 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SAMD4BQ5PRF9 694 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 SYT6Q5T7P8 510 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PRAMEF8Q5VWM4 474 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 LCN8Q6JVE9 175 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PMF1Q6P1K2 205 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PRMT9Q6P2P2 845 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 B3GLCTQ6Y288 498 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 STRADAQ7RTN6 431 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PAGE2Q7Z2X7 111 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ABHD12BQ7Z5M8 362 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 LUZP2Q86TE4 346 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF429Q86V71 674 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RANBP3LQ86VV4 465 aaPredicted RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 PARGQ86W56 976 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 DHFR2Q86XF0 187 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RAB43Q86YS6 212 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 KRTAP13-1Q8IUC0 172 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 STHQ8IWL8 128 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 CCDC36Q8IYA8 594 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 FAM71AQ8IYT1 594 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 RDH10Q8IZV5 341 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 KDM8Q8N371 416 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 EIF4E3Q8N5X7 224 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 MRPL43Q8N983 215 aaKnown RBP2.27□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM35BQ8NCS4 154 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 BPIFB6Q8NFQ5 453 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 OR4M1Q8NGD0 313 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 OR52H1Q8NGJ2 320 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 OR2T34Q8NGX1 318 aa2.27□□□□□ -2.05
VPS13C-208ENST00000559119 OR2T3Q8NH03 318 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms