RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GTF2E2P29084 291 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 TACR3P29371 465 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SLC6A6P31641 620 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 GGT2P36268 569 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SOX3P41225 446 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 RPS18P62269 152 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 TUBA4AP68366 448 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OC90Q02509 493 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 CRYZQ08257 329 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 ACSM1Q08AH1 577 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PPP1R8Q12972 351 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 TMED1Q13445 227 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PTGES3Q15185 160 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 QPRTQ15274 297 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 CD226Q15762 336 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZBED5Q49AG3 693 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 KCTD21Q4G0X4 260 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A53Q5H9E4 307 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A30Q5SVS4 291 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PDSS1Q5T2R2 415 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZNF691Q5VV52 312 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SMARCD3Q6STE5 483 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ISLR2Q6UXK2 745 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 DCDC5Q6ZRR9 648 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 LINGO2Q7L985 606 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OLIG3Q7RTU3 272 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZER1Q7Z7L7 766 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OAFQ86UD1 273 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PLCZ1Q86YW0 608 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 NKAIN4Q8IVV8 208 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 CHERPQ8IWX8 916 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 NRMQ8IXM6 262 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 HS3ST5Q8IZT8 346 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 GALNT16Q8N428 558 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 TMEM178AQ8NBL3 297 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OR2T33Q8NG76 320 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OR9Q2Q8NGE9 314 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OR1J4Q8NGS1 313 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OR14L1PQ8NHC6 308 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 HAS2Q92819 552 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 BCL2L2Q92843 193 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 MYDGFQ969H8 173 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 DACT3Q96B18 629 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 SPSB1Q96BD6 273 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 MSI2Q96DH6 328 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 BPIFA2Q96DR5 249 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 MUS81Q96NY9 551 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 MS4A10Q96PG2 267 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 NODALQ96S42 347 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 NIPSNAP1Q9BPW8 284 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PRSS27Q9BQR3 290 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PIGQQ9BRB3 760 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZNF426Q9BUY5 554 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 TAPBPLQ9BX59 468 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 FN3KQ9H479 309 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZNF696Q9H7X3 374 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 FKRPQ9H9S5 495 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A19Q9HC21 320 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 CHMP1AQ9HD42 196 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 NANSQ9NR45 359 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 MAN2C1Q9NTJ4 1040 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 SERTAD4Q9NUC0 356 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 AURKAIP1Q9NWT8 199 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 QPCTLQ9NXS2 382 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 VNN3Q9NY84 501 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 IL20Q9NYY1 176 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ZNF229Q9UJW7 825 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 BOKQ9UMX3 212 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 KLF13Q9Y2Y9 288 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 RPL36Q9Y3U8 105 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 LSM4Q9Y4Z0 139 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 CDH10Q9Y6N8 788 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 NBASA2RRP1 2371 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 GON4LQ3T8J9 2241 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TMED7-TICAM2A0A0A6YYA0 188 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CENPVL1A0A0U1RR11 272 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 EFCAB10A6NFE3 127 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HSPB2A8KAH6 182 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 DLGAP1O14490 977 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TRIM3O75382 744 aaPredicted RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 NCR1O76036 304 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 OR7A10O76100 309 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 NDUFB2O95178 105 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 IGHA1P01876 353 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 LYNP07948 512 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PRG2P13727 222 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 LIFP15018 202 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZNF17P17021 662 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 FUT1P19526 365 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 EDN2P20800 178 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PAICSP22234 425 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 F8A1P23610 371 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HTR2AP28223 471 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ELK4P28324 431 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CHATP28329 748 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SRD5A2P31213 254 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 GAS1P54826 345 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 UCNP55089 124 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 GP2P55259 537 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 CLDN6P56747 220 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms