RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 C8orf59Q8N0T1 100 aaPredicted RBP12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 OR6N2Q8NGY6 317 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 FAM222BQ8WU58 562 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 TFAP2CQ92754 450 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 BOD1Q96IK1 185 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 INTS14Q96SY0 518 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 TEAD3Q99594 435 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 SPOCK3Q9BQ16 436 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 NGBQ9NPG2 151 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 NPAP1Q9NZP6 1156 aa12.25□□□□□ -0.45
VIPAS39-208ENST00000556412 CCDC182A6NF36 153 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 SLC22A31A6NKX4 558 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 SELENOFO60613 162 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 ARR3P36575 388 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 HSPA13P48723 471 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 SNRPGP62308 76 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 LSM6P62312 80 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 AQP6Q13520 282 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 RAB39AQ14964 217 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 KCNMB1Q16558 191 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 HIST2H2BCQ6DN03 193 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 TMEM154Q6P9G4 183 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 DPPA2Q7Z7J5 298 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 OR2AJ1Q8NGZ0 328 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 AKR7LQ8NHP1 331 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 RFKQ969G6 155 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 SLC24A3Q9HC58 644 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 CLN6Q9NWW5 311 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 TIMM10BQ9Y5J6 103 aa12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 INTS1Q8N201 2190 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-208ENST00000556412 ZNF593O00488 134 aaPredicted RBP12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 RER1O15258 196 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 APOL3O95236 402 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 HRGP04196 525 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 CELA3BP08861 270 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 CBR1P16152 277 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 ATP6V1E1P36543 226 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 ENTPD1P49961 510 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 NUDT6P53370 316 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PLP2Q04941 152 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 SCRN3Q0VDG4 424 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 IL18R1Q13478 541 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 MAD2L1BPQ15013 274 aaPredicted RBP12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PABPC1L2AQ5JQF8 200 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 SSX8Q7RTT4 187 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 RHOXF1Q8NHV9 184 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 CNIH3Q8TBE1 160 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 SMAP2Q8WU79 429 aaPredicted RBP12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PIK3IP1Q96FE7 263 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 MS4A3Q96HJ5 214 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 OR2H1Q9GZK4 316 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 B3GNT2Q9NY97 397 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 LHFPL6Q9Y693 200 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 IQCMA0A1B0GVH7 501 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 TMCC2O75069 709 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 MMP7P09237 267 aaPredicted RBP12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 GABRB1P18505 474 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 CRYGSP22914 178 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 HTR1FP30939 366 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PSG4Q00888 419 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 MEDAGQ5VYS4 303 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 ZNF774Q6NX45 483 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 SEZ6L2Q6UXD5 910 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 OR51G2Q8NGK0 314 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PLPPR2Q96GM1 343 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 Q96MT0 163 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 CNN2Q99439 309 aaKnown RBP12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 AMBNQ9NP70 447 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 PLEK2Q9NYT0 353 aa12.23□□□□□ -0.45
VIPAS39-208ENST00000556412 LRRK2Q5S007 2527 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 PCNX1Q96RV3 2341 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 IGHV1-18A0A0C4DH31 117 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 SNTNA6NMZ2 147 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 SGCEO43556 437 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 DOK2O60496 412 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 PSKH1P11801 424 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 BSPH1Q075Z2 132 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 OCLNQ16625 522 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 BEX5Q5H9J7 111 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 SLC18B1Q6NT16 456 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 TMEM108Q6UXF1 575 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 SPATC1Q76KD6 591 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 SHFQ7M4L6 423 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 DPY19L4Q7Z388 723 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 MYPOPQ86VE0 399 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 TIGD4Q8IY51 512 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 ALDH16A1Q8IZ83 802 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 PIAS4Q8N2W9 510 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 ACBD4Q8NC06 268 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 APH1BQ8WW43 257 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 ZNF184Q99676 751 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 WNT5BQ9H1J7 359 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 RASSF4Q9H2L5 321 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 ESRP2Q9H6T0 727 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 MOV10Q9HCE1 1003 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 KCNN3Q9UGI6 736 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 WARS2Q9UGM6 360 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 CYB5R1Q9UHQ9 305 aa12.22□□□□□ -0.45
VIPAS39-208ENST00000556412 KCNG2Q9UJ96 466 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms