RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 A0A096LNT2 108 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 IQCMA0A1B0GVH7 501 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 C5orf49A4QMS7 147 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 LYNX1G3V0Z9 82 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 GSC2O15499 205 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 ENTPD5O75356 428 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SOX14O95416 240 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 LYNX1P0DP58 116 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 NR2C1P13056 603 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 STOMP27105 288 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC6A6P31641 620 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 GLRXP35754 106 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 RPS6KA3P51812 740 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 GALK2Q01415 458 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 PLP2Q04941 152 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 CARTPTQ16568 116 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 DNAL1Q4LDG9 190 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 TMEM255AQ5JRV8 349 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SPATA46Q5T0L3 261 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 LEG1Q6P5S2 330 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 DPPA2Q7Z7J5 298 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SPATA24Q86W54 205 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 ZNF101Q8IZC7 436 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 OR6V1Q8N148 313 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 ICA1LQ8NDH6 482 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 C11orf40Q8WZ69 217 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC7A6Q92536 515 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 GTF3AQ92664 365 aaKnown RBP9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 TRIM15Q9C019 465 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 NDEL1Q9GZM8 345 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 KCNN2Q9H2S1 579 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 SRA1Q9HD15 236 aaKnown RBP9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 FBXL3Q9UKT7 428 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 POMPQ9Y244 141 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 TIMM10BQ9Y5J6 103 aa9.95□□□□□ -0.82
CCDC88C-208ENST00000554165 CHD3Q12873 2000 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 IGLV1-36A0A0B4J1U3 117 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 DHRS12A0PJE2 317 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 OR6C68A6NDL8 312 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 ARPC3O15145 178 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 AHCYL1O43865 530 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 KHDRBS3O75525 346 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 DNAJC8O75937 253 aaPredicted RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 NGFP01138 241 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 TP53P04637 393 aaPredicted RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 LCKP06239 509 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 RAP2AP10114 183 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 BMP4P12644 408 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 APEHP13798 732 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 APLNRP35414 380 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 IFNGR2P38484 337 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 MPV17P39210 176 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 CENPAP49450 140 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 PPOXP50336 477 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 UCP2P55851 309 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 GLO1Q04760 184 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 FLOT2Q14254 428 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 MICAQ29983 383 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 TBC1D28Q2M2D7 210 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 ZNF362Q5T0B9 420 aaPredicted RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 CORO6Q6QEF8 472 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 CLEC2AQ6UVW9 174 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 RFPL4BQ6ZWI9 263 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 ADCK1Q86TW2 530 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 HS3ST5Q8IZT8 346 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 CYB561A3Q8NBI2 242 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 NPEPL1Q8NDH3 523 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 SDR9C7Q8NEX9 313 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 OR52E2Q8NGJ4 325 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 OR4Q3Q8NH05 313 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 FNDC8Q8TC99 324 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 C10orf105Q8TEF2 133 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 ZNRF4Q8WWF5 429 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 SLCO4A1Q96BD0 722 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 NIPSNAP1Q9BPW8 284 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 RHNO1Q9BSD3 238 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 REEP1Q9H902 201 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 DYNLRB1Q9NP97 96 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 RPRD1BQ9NQG5 326 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 ARMC1Q9NVT9 282 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC7A8Q9UHI5 535 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 B9D1Q9UPM9 204 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 SPEF1Q9Y4P9 236 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 CDH10Q9Y6N8 788 aa9.94□□□□□ -0.82
CCDC88C-208ENST00000554165 AQP12BA6NM10 295 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 C12orf71A8MTZ7 269 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 VSTM5A8MXK1 200 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 BHLHE40O14503 412 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 RER1O15258 196 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 SNAP29O95721 258 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 CST1P01037 141 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 TFP02787 698 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 HEXAP06865 529 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 GAAP10253 952 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 NAT2P11245 290 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 HOXB4P17483 251 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 PRKACGP22612 351 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 PYCR1P32322 319 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 GUCA1AP43080 201 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 GDI2P50395 445 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms