RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SPOCK1Q08629 439 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SERTAD2Q14140 314 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 EIF2B1Q14232 305 aaKnown RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 EBPQ15125 230 aaKnown RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 NR0B2Q15466 257 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 FAM166AQ6J272 317 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 C11orf88Q6PI97 169 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 PRSS42Q7Z5A4 293 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RTN4RL2Q86UN3 420 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 LINC00346Q8IVM7 164 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF679Q8IYX0 411 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 STPG2Q8N412 459 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SPERTQ8NA61 448 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RELL2Q8NC24 303 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 OR4S1Q8NGB4 309 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF519Q8TB69 540 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 C8orf44Q96CB5 159 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SEH1LQ96EE3 360 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CYYR1Q96J86 154 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SLC46A1Q96NT5 459 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CCNL2Q96S94 520 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ABHD6Q9BV23 337 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TMPRSS13Q9BYE2 586 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 APMAPQ9HDC9 416 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 PDE7BQ9NP56 450 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CUTCQ9NTM9 273 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 KIF25Q9UIL4 384 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 FBXL2Q9UKC9 423 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 COA3Q9Y2R0 106 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM14AQ9Y6G1 99 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TRAV36DV7A0A075B6V5 113 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 LOC100509620A0A075B734 347 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMED7-TICAM2A0A0A6YYA0 188 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 IGHV3-20A0A0C4DH32 117 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 A0A1W2PPC1 479 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM150CB9EJG8 249 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 RP2O75695 350 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 SLC25A12O75746 678 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF432O94892 652 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 HOXD4P09016 255 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 GABRA1P14867 456 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 FASLGP48023 281 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 LBX1P52954 281 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 BTN1A1Q13410 526 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TEX30Q5JUR7 227 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 LY6G6FQ5SQ64 297 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 C1orf189Q5VU69 101 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TSSK4Q6SA08 328 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 GSG1LQ6UXU4 331 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 GABRG1Q8N1C3 465 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ADAMTS18Q8TE60 1221 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 RNF128Q8TEB7 428 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 GPX8Q8TED1 209 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 NKD1Q969G9 470 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 SLC25A44Q96H78 314 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF587Q96SQ5 575 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 CMKLR1Q99788 373 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 DUSP15Q9H1R2 295 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 DHDHQ9UQ10 334 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 FARSAQ9Y285 508 aaKnown RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMED7Q9Y3B3 224 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 EMC9Q9Y3B6 208 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 CELSR3Q9NYQ7 3312 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TRAV14DV4A0A0A6YYC5 116 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 IGKV1D-43A0A0B4J1Z2 117 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 SLC22A23A1A5C7 686 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 BLACEA4D250 179 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 FITM1A5D6W6 292 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM235A6NFC5 223 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 WIPF3A6NGB9 483 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 EIF1AYO14602 144 aaKnown RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 CCSO14618 274 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TSPAN4O14817 238 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 NUPL2O15504 423 aaKnown RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TSPAN2O60636 221 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM127O75204 238 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 RLN2P04090 185 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 AMY2AP04746 511 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 PPP3CBP16298 524 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF28P17035 718 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ABCD3P28288 659 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 HTR2CP28335 458 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 BLKP51451 505 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 PLCXD2Q0VAA5 305 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 NKPD1Q17RQ9 610 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 SLC22A6Q4U2R8 563 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 COL13A1Q5TAT6 717 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF660Q6AZW8 331 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 SLC18B1Q6NT16 456 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM81Q6P7N7 255 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 LRFN4Q6PJG9 635 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 CORO6Q6QEF8 472 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 LANCL3Q6ZV70 420 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 MAMDC2Q7Z304 686 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-213ENST00000552720 OR6M1Q8NGM8 313 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 OR1J2Q8NGS2 313 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 C15orf40Q8WUR7 153 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 CMBLQ96DG6 245 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 TBL1XR1Q9BZK7 514 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 EPHA6Q9UF33 1036 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms