RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CDKN2AP42771 156 aaKnown RBP12.68□□□□□ -0.38
USP28-204ENST00000537642 MAGEA2P43356 314 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 GSSP48637 474 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 GDI2P50395 445 aaKnown RBP12.68□□□□□ -0.38
USP28-204ENST00000537642 RPS6KA3P51812 740 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 HMGA2P52926 109 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 PCBD1P61457 104 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 TRIM25Q14258 630 aaKnown RBP12.68□□□□□ -0.38
USP28-204ENST00000537642 RFX4Q33E94 735 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 ZNF774Q6NX45 483 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 C1orf94Q6P1W5 598 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 SYT9Q86SS6 491 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 ADCK1Q86TW2 530 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 ZNF101Q8IZC7 436 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 SYNPRQ8TBG9 265 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 UBASH3BQ8TF42 649 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 BPESC1Q9GZL8 116 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 OR52D1Q9H346 318 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 MUC13Q9H3R2 512 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 MS4A5Q9H3V2 200 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 YAE1D1Q9NRH1 226 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 TAS2R1Q9NYW7 299 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 TAAR3PQ9P1P4 343 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 TMCC3Q9ULS5 477 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 LYVE1Q9Y5Y7 322 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 MALRD1Q5VYJ5 2156 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 JMJD1CQ15652 2540 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 IGHV4-61A0A0C4DH41 118 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 LYNX1G3V0Z9 82 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 KHDRBS3O75525 346 aaKnown RBP12.67□□□□□ -0.38
USP28-204ENST00000537642 LYNX1P0DP58 116 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 NAT2P11245 290 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 GIFP27352 417 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 GGTLC2Q14390 218 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ALKBH6Q3KRA9 238 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ELFN2Q5R3F8 820 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 OTPQ5XKR4 325 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 PGBD2Q6P3X8 592 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 DHFR2Q86XF0 187 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ALDH16A1Q8IZ83 802 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ZNF786Q8N393 782 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ICA1LQ8NDH6 482 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 OR4C15Q8NGM1 316 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 OR1J1Q8NGS3 322 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 GNPDA2Q8TDQ7 276 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 C11orf40Q8WZ69 217 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 CLPTM1LQ96KA5 538 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 ERMAPQ96PL5 475 aaPredicted RBP12.67□□□□□ -0.38
USP28-204ENST00000537642 NUAK2Q9H093 628 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 C1orf21Q9H246 121 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 RERGLQ9H628 205 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 MAGIXQ9H6Y5 334 aa12.67□□□□□ -0.38
USP28-204ENST00000537642 PRPF19Q9UMS4 504 aaKnown RBP12.67□□□□□ -0.38
USP28-204ENST00000537642 COA3Q9Y2R0 106 aaPredicted RBP12.67□□□□□ -0.38
USP28-204ENST00000537642 TNFRSF11BO00300 401 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 ARPC3O15145 178 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 KRT36O76013 467 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 MPZL1O95297 269 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 HPXP02790 462 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 IGHV4-31P0DP07 118 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 SLC6A6P31641 620 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 IFNGR2P38484 337 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 KLF3P57682 345 aaPredicted RBP12.66□□□□□ -0.38
USP28-204ENST00000537642 TSPAN31Q12999 210 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 NKPD1Q17RQ9 610 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 C6orf52Q5T4I8 152 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 ZNF620Q6ZNG0 422 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 RFPL4BQ6ZWI9 263 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 GLB1L2Q8IW92 636 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 ZNF540Q8NDQ6 660 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 OR9Q2Q8NGE9 314 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 SAMD8Q96LT4 415 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 TSSK2Q96PF2 358 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 BTBD10Q9BSF8 475 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 WACQ9BTA9 647 aa12.66□□□□□ -0.38
USP28-204ENST00000537642 EIF3KQ9UBQ5 218 aaKnown RBP12.66□□□□□ -0.38
USP28-204ENST00000537642 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.65□□□□□ -0.388e-9■■■■□ 25.3
USP28-204ENST00000537642 DCTN6O00399 190 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 ICMTO60725 284 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 CRLF1O75462 422 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 NCR1O76036 304 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 GPANK1O95872 356 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 COX5BP10606 129 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 HIST1H1CP16403 213 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 SELENOVP59797 346 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 LSM6P62312 80 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 SCRN3Q0VDG4 424 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 DBPQ10586 325 aaPredicted RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 PPP1R8Q12972 351 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 RIN1Q13671 783 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 TMEM255AQ5JRV8 349 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 SPATA46Q5T0L3 261 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 ZNF770Q6IQ21 691 aaPredicted RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 TRPM8Q7Z2W7 1104 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 PRIMA1Q86XR5 153 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 SLC25A40Q8TBP6 338 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 BCAS4Q8TDM0 211 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 GTF3AQ92664 365 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 CCDC124Q96CT7 223 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 ASB9Q96DX5 294 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms