RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DCAF12L2Q5VW00 463 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 MBNL2Q5VZF2 373 aaKnown RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 FKBP9P1Q75LS8 142 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 ZNF771Q7L3S4 317 aaPredicted RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 ARPINQ7Z6K5 226 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 ZER1Q7Z7L7 766 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 MEX3DQ86XN8 651 aaKnown RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 ZNF101Q8IZC7 436 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 ZFAND2BQ8WV99 257 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 NMD3Q96D46 503 aaKnown RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 MARS2Q96GW9 593 aaKnown RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 C4orf45Q96LM5 186 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 JMJD8Q96S16 334 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 DIRC2Q96SL1 478 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 GRHPRQ9UBQ7 328 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 CGGBP1Q9UFW8 167 aaPredicted RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 ZDHHC8Q9ULC8 765 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 NDRG4Q9ULP0 352 aaKnown RBP12.54□□□□□ -0.4
VPS28-215ENST00000531924 PCDHB10Q9UN67 800 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 A4GNTQ9UNA3 340 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 CACNG2Q9Y698 323 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 LOC105371242A0A075B767 164 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 TRAV27A0A087WT01 109 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 H3BSA7 217 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 TIMM8AO60220 97 aaPredicted RBP12.53□□□□□ -0.4
VPS28-215ENST00000531924 VENTXO95231 258 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 IGHMP01871 453 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 H2AFXP16104 143 aaPredicted RBP12.53□□□□□ -0.4
VPS28-215ENST00000531924 MAKP20794 623 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 GSTM3P21266 225 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 EPHA1P21709 976 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 TNFSF4P23510 183 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 SLC9A3P48764 834 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 ZNF774Q6NX45 483 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 RFPL4BQ6ZWI9 263 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 CYP4Z1Q86W10 505 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 RNF113BQ8IZP6 322 aaKnown RBP12.53□□□□□ -0.4
VPS28-215ENST00000531924 OFCC1Q8IZS5 231 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 CLDN22Q8N7P3 220 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 ST7LQ8TDW4 575 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 GEMIN6Q8WXD5 167 aaKnown RBP12.53□□□□□ -0.4
VPS28-215ENST00000531924 ACOT11Q8WXI4 607 aaPredicted RBP12.53□□□□□ -0.4
VPS28-215ENST00000531924 RCN3Q96D15 328 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 WNT5BQ9H1J7 359 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 UBAP1Q9NZ09 502 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 ANK2Q01484 3957 aa12.53□□□□□ -0.4
VPS28-215ENST00000531924 ZSCAN5BA6NJL1 495 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 TRIM77I1YAP6 450 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 J3QLI3 93 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 SLC22A2O15244 555 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 ABHD16AO95870 558 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 IGHV2-5P01817 119 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 MMP15P51511 669 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 LIPEQ05469 1076 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 PRKCDQ05655 676 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 SCRN3Q0VDG4 424 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 IFI44LQ53G44 452 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 VTCN1Q7Z7D3 282 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 SYT9Q86SS6 491 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 POU5F2Q8N7G0 328 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 OR13C2Q8NGS9 318 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 NANPQ8TBE9 248 aa12.52□□□□□ -0.41
VPS28-215ENST00000531924 GCDHQ92947 438 aaPredicted RBP12.52□□□□□ -0.41
VPS28-215ENST00000531924 H7C1C5 153 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 J3KTA2 159 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 CXCR6O00574 342 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 NGFP01138 241 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 GATA3P23771 443 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 GPR4P46093 362 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 HTR5AP47898 357 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 LCN6P62502 163 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 TNFAIP6P98066 277 aaPredicted RBP12.51□□□□□ -0.41
VPS28-215ENST00000531924 MTX3Q5HYI7 312 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 MBOAT2Q6ZWT7 520 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 BPIFB2Q8N4F0 458 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 NPEPL1Q8NDH3 523 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 RP9Q8TA86 221 aaKnown RBP12.51□□□□□ -0.41
VPS28-215ENST00000531924 FAM162AQ96A26 154 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 DCLRE1CQ96SD1 692 aaKnown RBP12.51□□□□□ -0.41
VPS28-215ENST00000531924 WACQ9BTA9 647 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 SUCNR1Q9BXA5 334 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 RERGLQ9H628 205 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 C7orf69Q9H7B7 122 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 MSL2Q9HCI7 577 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 EMC7Q9NPA0 242 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 G6PC2Q9NQR9 355 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 POLE4Q9NR33 117 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 CMTM6Q9NX76 183 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 ARMCX1Q9P291 453 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 TMEM5Q9Y2B1 443 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 FAM32AQ9Y421 112 aaKnown RBP12.51□□□□□ -0.41
VPS28-215ENST00000531924 SNX13Q9Y5W8 968 aa12.51□□□□□ -0.41
VPS28-215ENST00000531924 NDUFAB1O14561 156 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 AHCYL1O43865 530 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 DOK2O60496 412 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 SASH3O75995 380 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 CD14P08571 375 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 SBK2P0C263 348 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 TUBG1P23258 451 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms