RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DYNC1I1O14576 645 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 SLC22A2O15244 555 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 PIP5K1CO60331 668 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 CCDC22O60826 627 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 CD55P08174 381 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 CST2P09228 141 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 LIMS1P48059 325 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 RPL27P61353 136 aaKnown RBP9.62□□□□□ -0.87
VPS28-214ENST00000531032 PPP1CBP62140 327 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 SLC3A1Q07837 685 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 ST3GAL3Q11203 375 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 TOP3AQ13472 1001 aaPredicted RBP9.62□□□□□ -0.87
VPS28-214ENST00000531032 FAM205BPQ63HN1 556 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 POU5F2Q8N7G0 328 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 CLDN22Q8N7P3 220 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 LRRC75AQ8NAA5 344 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 OR2T12Q8NG77 320 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 NANPQ8TBE9 248 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 C10orf82Q8WW14 230 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 CCL17Q92583 94 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 GCDHQ92947 438 aaPredicted RBP9.62□□□□□ -0.87
VPS28-214ENST00000531032 BPIFA2Q96DR5 249 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 ZMYND19Q96E35 227 aaPredicted RBP9.62□□□□□ -0.87
VPS28-214ENST00000531032 PRRC1Q96M27 445 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 ZNF583Q96ND8 569 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 GAL3ST1Q99999 423 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 SUCNR1Q9BXA5 334 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 EGLN1Q9GZT9 426 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 FAM107BQ9H098 131 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 OPN4Q9UHM6 478 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 KLHL21Q9UJP4 597 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 ZDHHC8Q9ULC8 765 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 A4GNTQ9UNA3 340 aa9.62□□□□□ -0.87
VPS28-214ENST00000531032 PPIAL4EA0A075B759 164 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 PPIAL4CA0A0B4J2A2 164 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 PPIAL4DF5H284 164 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ATP8B1O43520 1251 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 NGFP01138 241 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 FSHBP01225 129 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 PPIAL4FP0DN26 164 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 IFI30P13284 250 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ADRA2CP18825 462 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 LAP3P28838 519 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 IFNA8P32881 189 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 KDELR2P33947 212 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 PCBD1P61457 104 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 FHL1Q13642 323 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 CYBRD1Q53TN4 286 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ZMAT1Q5H9K5 638 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ALDH16A1Q8IZ83 802 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 RP9Q8TA86 221 aaKnown RBP9.61□□□□□ -0.87
VPS28-214ENST00000531032 ABHD4Q8TB40 342 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 RBP7Q96R05 134 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 DIRC2Q96SL1 478 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 SLC6A7Q99884 636 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ELOVL3Q9HB03 270 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ESM1Q9NQ30 184 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 AP3M1Q9Y2T2 418 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 TIMM10BQ9Y5J6 103 aa9.61□□□□□ -0.87
VPS28-214ENST00000531032 ISPDA4D126 451 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 A6NIZ1 184 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 GSTA4O15217 222 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 MSR1P21757 451 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 FUT4P22083 530 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 ARHGDIAP52565 204 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 CTXN1P60606 82 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 RAP1BP61224 184 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 RAP1AP62834 184 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 SELENOWP63302 87 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 ENDOGQ14249 297 aaKnown RBP9.6□□□□□ -0.87
VPS28-214ENST00000531032 TUSC1Q2TAM9 212 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 SPRNQ5BIV9 151 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 MTX3Q5HYI7 312 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 ZNF774Q6NX45 483 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 SYT9Q86SS6 491 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 IGFN1Q86VF2 1251 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 MICU2Q8IYU8 434 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 BPIFB2Q8N4F0 458 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 C3orf56Q8N813 242 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 GEMIN6Q8WXD5 167 aaKnown RBP9.6□□□□□ -0.87
VPS28-214ENST00000531032 LZICQ8WZA0 190 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 TPD52L3Q96J77 140 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 C4orf45Q96LM5 186 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 C7orf69Q9H7B7 122 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 MSL2Q9HCI7 577 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 POLE4Q9NR33 117 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 MAN2C1Q9NTJ4 1040 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 NDRG4Q9ULP0 352 aaKnown RBP9.6□□□□□ -0.87
VPS28-214ENST00000531032 ARHGAP32A7KAX9 2087 aa9.6□□□□□ -0.87
VPS28-214ENST00000531032 TRAV27A0A087WT01 109 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 A0A1W2PPL8 197 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 ELOVL7A1L3X0 281 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 C12orf71A8MTZ7 269 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 SPRY1O43609 319 aaPredicted RBP9.59□□□□□ -0.87
VPS28-214ENST00000531032 FOXH1O75593 365 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 PRSS23O95084 383 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 IGHV2-70P01814 119 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 COX5BP10606 129 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 COX4I1P13073 169 aa9.59□□□□□ -0.87
VPS28-214ENST00000531032 EGR1P18146 543 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms