RNA–Protein interactions for RNA: ENST00000530004.5

TTC39A-216, Transcript of tetratricopeptide repeat domain 39A, humanhuman

TSL 1 (best) BASIC

Gene TTC39A, Length 1,780 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39A-216ENST00000530004 TUBA1AQ71U36 451 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 KCTD20Q7Z5Y7 419 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 TMEM123Q8N131 208 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 OR6N1Q8NGY5 312 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 ABHD3Q8WU67 409 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 C11orf40Q8WZ69 217 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 TMEM54Q969K7 222 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 TXNL4BQ9NX01 149 aaKnown RBP12.74□□□□□ -0.37
TTC39A-216ENST00000530004 GLTPQ9NZD2 209 aa12.74□□□□□ -0.37
TTC39A-216ENST00000530004 SHANK1Q9Y566 2161 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 METTL15A6NJ78 407 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 OGG1O15527 345 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 WDR1O75083 606 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 SYNGR4O95473 234 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 HRGP04196 525 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 HLA-DPB1P04440 258 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 EDNRAP25101 427 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 LAP3P28838 519 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 SIRPAP78324 504 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 RASGEF1BQ0VAM2 473 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 EIF2B1Q14232 305 aaKnown RBP12.73□□□□□ -0.37
TTC39A-216ENST00000530004 CDK5R1Q15078 307 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 DGUOKQ16854 277 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 LIPNQ5VXI9 398 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 DMKNQ6E0U4 476 aaPredicted RBP12.73□□□□□ -0.37
TTC39A-216ENST00000530004 LRFN4Q6PJG9 635 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 YIPF7Q8N8F6 280 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 ZNF454Q8N9F8 522 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 ASB17Q8WXJ9 295 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 DCLRE1CQ96SD1 692 aaKnown RBP12.73□□□□□ -0.37
TTC39A-216ENST00000530004 TTYH2Q9BSA4 534 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 HDHD5Q9BXW7 423 aa12.73□□□□□ -0.37
TTC39A-216ENST00000530004 RALYQ9UKM9 306 aaKnown RBP12.73□□□□□ -0.37
TTC39A-216ENST00000530004 SMG1Q96Q15 3661 aaKnown RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 TRDV1A0A1B0GX56 115 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 SULT1C4O75897 302 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 RPP14O95059 124 aaKnown RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 CD53P19397 219 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 PTGER4P35408 488 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 GDI2P50395 445 aaKnown RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 SF3B4Q15427 424 aaKnown RBP eCLIP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 ACSF3Q4G176 576 aaPredicted RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 TEX30Q5JUR7 227 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 PHYHD1Q5SRE7 291 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 RPL22L1Q6P5R6 122 aaKnown RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 PLXDC2Q6UX71 529 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 DOLPP1Q86YN1 238 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 OR10H5Q8NGA6 315 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 FNDC9Q8TBE3 224 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 SMIM19Q96E16 107 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 PGLYRP3Q96LB9 341 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 TRIB1Q96RU8 372 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 COQ7Q99807 217 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 ABHD6Q9BV23 337 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 SEC61A2Q9H9S3 476 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 SLCO1C1Q9NYB5 712 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 CLCF1Q9UBD9 225 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 MCTS1Q9ULC4 181 aaKnown RBP12.72□□□□□ -0.37
TTC39A-216ENST00000530004 RCE1Q9Y256 329 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 ZNF175Q9Y473 711 aa12.72□□□□□ -0.37
TTC39A-216ENST00000530004 TRBV2A0A0J9YWF9 115 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 CD8B2A6NJW9 211 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 GABRPO00591 440 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 UPK3AO75631 287 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 RGS9O75916 674 aaPredicted RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 AQP8O94778 261 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 ABHD16AO95870 558 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 CD8BP10966 210 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 FGF9P31371 208 aaPredicted RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 CDAP32320 146 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 TGM4P49221 684 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 MRPL49Q13405 166 aaKnown RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 INSL4Q14641 139 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 PCK2Q16822 640 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 CCDC58Q4VC31 144 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 RTL6Q6ICC9 239 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 LRRN1Q6UXK5 716 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 EGFL6Q8IUX8 553 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 LINC00346Q8IVM7 164 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 C20orf196Q8IYI0 205 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 GHSRQ92847 366 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 INTS12Q96CB8 462 aaKnown RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 KCTD7Q96MP8 289 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 OR8B4Q96RC9 309 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 CDADC1Q9BWV3 514 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 TP63Q9H3D4 680 aaPredicted RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 FOXD3Q9UJU5 478 aaPredicted RBP12.71□□□□□ -0.37
TTC39A-216ENST00000530004 TINAGQ9UJW2 476 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 GSTK1Q9Y2Q3 226 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 FAM215AQ9Y5M1 114 aa12.71□□□□□ -0.37
TTC39A-216ENST00000530004 SLC22A20A6NK97 555 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 TMCC2O75069 709 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 SLC43A1O75387 559 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 CLPXO76031 633 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 TGM6O95932 706 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 HOXD4P09016 255 aaPredicted RBP12.71□□□□□ -0.38
TTC39A-216ENST00000530004 NTF4P34130 210 aa12.71□□□□□ -0.38
TTC39A-216ENST00000530004 ZNF133P52736 654 aaPredicted RBP12.71□□□□□ -0.38
TTC39A-216ENST00000530004 MRPL28Q13084 256 aaKnown RBP12.71□□□□□ -0.38
TTC39A-216ENST00000530004 TRAM1Q15629 374 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms