RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 AK6Q9Y3D8 172 aaKnown RBP18.4■□□□□ 0.54
VPS28-209ENST00000528142 TRBV5-7A0A0A0MS05 114 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 ANKRD61A6NGH8 418 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 GPR171O14626 319 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 TMCC2O75069 709 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 TRAPPC6AO75865 159 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 IL7P13232 177 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 ENPP1P22413 925 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 PTBP1P26599 531 aaKnown RBP eCLIP18.39■□□□□ 0.54
VPS28-209ENST00000528142 MAPK3P27361 379 aaPredicted RBP18.39■□□□□ 0.54
VPS28-209ENST00000528142 GDF1P27539 372 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 CATSPERDQ86XM0 798 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 OR9K2Q8NGE7 335 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 GPR148Q8TDV2 347 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 RNF133Q8WVZ7 376 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 ADGRG7Q96K78 797 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 ZNF385AQ96PM9 386 aaKnown RBP18.39■□□□□ 0.54
VPS28-209ENST00000528142 SMAD5Q99717 465 aaKnown RBP18.39■□□□□ 0.54
VPS28-209ENST00000528142 PLA2G3Q9NZ20 509 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 SLC22A13Q9Y226 551 aa18.39■□□□□ 0.54
VPS28-209ENST00000528142 MED12Q93074 2177 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 DOCK10Q96BY6 2186 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 SMAD9O15198 467 aaKnown RBP18.39■□□□□ 0.53
VPS28-209ENST00000528142 TLX3O43711 291 aaPredicted RBP18.39■□□□□ 0.53
VPS28-209ENST00000528142 PAHP00439 452 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 QDPRP09417 244 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 GFRA1P56159 465 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 CDC20Q12834 499 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 RIN1Q13671 783 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 ATP1A1-AS1Q5TC04 95 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 CORO6Q6QEF8 472 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 LINC00696Q6ZRV3 163 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 ZIC4Q8N9L1 334 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 OR10H5Q8NGA6 315 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 OR51A4Q8NGJ6 313 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 PPP1R14AQ96A00 147 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 HES7Q9BYE0 225 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 CYSLTR2Q9NS75 346 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 TBC1D24Q9ULP9 559 aa18.39■□□□□ 0.53
VPS28-209ENST00000528142 A0A1W2PPL8 197 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 PDCD5O14737 125 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 PTTG1O95997 202 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 RAF1P04049 648 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 SOX2P48431 317 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 KCNMB1Q16558 191 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 ESPNLQ6ZVH7 1005 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 LRRC28Q86X40 367 aaPredicted RBP18.38■□□□□ 0.53
VPS28-209ENST00000528142 SULF2Q8IWU5 870 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 TRMT10AQ8TBZ6 339 aaKnown RBP18.38■□□□□ 0.53
VPS28-209ENST00000528142 TMEM54Q969K7 222 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 OR2M2Q96R28 347 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 SF3B5Q9BWJ5 86 aaKnown RBP18.38■□□□□ 0.53
VPS28-209ENST00000528142 SLC25A18Q9H1K4 315 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 GLTPQ9NZD2 209 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 ABRACLQ9P1F3 81 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 FBXL3Q9UKT7 428 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 R4GMQ9 66 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 FREM2Q5SZK8 3169 aa18.38■□□□□ 0.53
VPS28-209ENST00000528142 ARPC4-TTLL3A0A0A6YYG9 625 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 EIF1AYO14602 144 aaKnown RBP18.37■□□□□ 0.53
VPS28-209ENST00000528142 PFDN1O60925 122 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 CSF3P09919 207 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 NPR2P20594 1047 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 STARP49675 285 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 ZNF133P52736 654 aaPredicted RBP18.37■□□□□ 0.53
VPS28-209ENST00000528142 SUCLG1P53597 346 aaKnown RBP18.37■□□□□ 0.53
VPS28-209ENST00000528142 CLDN15P56746 228 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 CARD18P57730 90 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 DEFA1P59665 94 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 DEFA3P59666 94 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 P2RY14Q15391 338 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 ODF4Q2M2E3 257 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 C11orf91Q3C1V1 193 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 PYDC2Q56P42 97 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 TMEM123Q8N131 208 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 SAMD12Q8N8I0 201 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS28-209ENST00000528142 ZNF703Q9H7S9 590 aaPredicted RBP18.37■□□□□ 0.53
VPS28-209ENST00000528142 FUOMA2VDF0 154 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 FAM25AB3EWG3 89 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 FAM25CB3EWG5 89 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 FAM25GB3EWG6 89 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 NPIPA2E9PIF3 369 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 NPIPA3F8WFD2 350 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 EIF4EP06730 217 aaKnown RBP18.37■□□□□ 0.53
VPS28-209ENST00000528142 CDAP32320 146 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 MADCAM1Q13477 382 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 ZNF544Q6NX49 715 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 IGF2-ASQ6U949 168 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 STAC2Q6ZMT1 411 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 GDPD3Q7L5L3 318 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 LRRTM1Q86UE6 522 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 GALNT16Q8N428 558 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 OR10S1Q8NGN2 331 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 OR5H6Q8NGV6 325 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 SETD6Q8TBK2 473 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 SEC61A2Q9H9S3 476 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 EMC7Q9NPA0 242 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 MALT1Q9UDY8 824 aa18.37■□□□□ 0.53
VPS28-209ENST00000528142 LHFPL6Q9Y693 200 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms