RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SSR4P51571 173 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 PCBP3P57721 371 aaKnown RBP11.55□□□□□ -0.56
USP53-209ENST00000514665 PLA2G7Q13093 441 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 MLC1Q15049 377 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 STAC2Q6ZMT1 411 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 NKAIN3Q8N8D7 197 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 OR9K2Q8NGE7 335 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 FAM174AQ8TBP5 190 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 PSMF1Q92530 271 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 PARP12Q9H0J9 701 aaKnown RBP11.55□□□□□ -0.56
USP53-209ENST00000514665 EXO1Q9UQ84 846 aaKnown RBP11.55□□□□□ -0.56
USP53-209ENST00000514665 AGAP14A8MT82 685 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 STMND1H3BQB6 276 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 CISD3P0C7P0 127 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 MAGEB1P43366 347 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PCBD1P61457 104 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ARG2P78540 354 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 CDK5Q00535 292 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 EP300Q09472 2414 aaPredicted RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 C2orf76Q3KRA6 126 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PHLDA2Q53GA4 152 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 TMUB2Q71RG4 321 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 SUMF1Q8NBK3 374 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PXT1Q8NFP0 134 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 GPR119Q8TDV5 335 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 TCEAL3Q969E4 200 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 MED18Q9BUE0 208 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 LUZP4Q9P127 313 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 SIGLEC7Q9Y286 467 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 WIF1Q9Y5W5 379 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 SDCBPO00560 298 aaPredicted RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 ZNF780AO75290 641 aaPredicted RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 ABHD16AO95870 558 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 LPLP06858 475 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ATF1P18846 271 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 GPR85P60893 370 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 LSM11P83369 360 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP53-209ENST00000514665 IKZF1Q13422 519 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 CLINT1Q14677 625 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ZNF813Q6ZN06 617 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 LINC00696Q6ZRV3 163 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 EDAQ92838 391 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 DNAJB11Q9UBS4 358 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PLEKHB1Q9UF11 243 aaPredicted RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 A0A0U1RQK1 487 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 NTN1O95631 604 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 GUSBP08236 651 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 CD53P19397 219 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ALOX5APP20292 161 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PCBP4P57723 403 aaKnown RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 TGFBR3Q03167 851 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ZNF674Q2M3X9 581 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 ACTBL2Q562R1 376 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 OGFOD3Q6PK18 319 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 GABRG1Q8N1C3 465 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 RELL2Q8NC24 303 aaPredicted RBP11.54□□□□□ -0.56
USP53-209ENST00000514665 BHLHE23Q8NDY6 225 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 OR56B2PQ8NGI1 322 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 OR8D4Q8NGM9 314 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 MCOLN1Q9GZU1 580 aa11.54□□□□□ -0.56
USP53-209ENST00000514665 PUS1Q9Y606 427 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP53-209ENST00000514665 EDN3P14138 238 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 RPA2P15927 270 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 EPHA4P54764 986 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 THSD4Q6ZMP0 1018 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 RNF165Q6ZSG1 346 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 RPS19BP1Q86WX3 136 aaKnown RBP11.53□□□□□ -0.56
USP53-209ENST00000514665 KLHDC8BQ8IXV7 354 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SUMF2Q8NBJ7 301 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 OR14K1Q8NGZ2 314 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 FAM213BQ8TBF2 198 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 RNF128Q8TEB7 428 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SLAMF6Q96DU3 332 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 ARHGDIGQ99819 225 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 ARPC5LQ9BPX5 153 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 GAREM1Q9H706 876 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 CALHM2Q9HA72 323 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 CYSLTR2Q9NS75 346 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 TXNL1O43396 289 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SCO1O75880 301 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 FGF9P31371 208 aaPredicted RBP11.53□□□□□ -0.56
USP53-209ENST00000514665 CAPZBP47756 277 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 PEA15Q15121 130 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 ZNF684Q5T5D7 378 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 PTCRAQ6ISU1 281 aaPredicted RBP11.53□□□□□ -0.56
USP53-209ENST00000514665 MDGA2Q7Z553 956 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 CLEC1AQ8NC01 280 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 FKRPQ9H9S5 495 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SIRT3Q9NTG7 399 aaPredicted RBP11.53□□□□□ -0.56
USP53-209ENST00000514665 SLCO1C1Q9NYB5 712 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 MRPS2Q9Y399 296 aaKnown RBP11.53□□□□□ -0.56
USP53-209ENST00000514665 UBR3Q6ZT12 1888 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 CDC42EP2O14613 210 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 IL2RGP31785 369 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 FOXK1P85037 733 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 LTC4SQ16873 150 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 PXDC1Q5TGL8 231 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 Q6ZS52 159 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 GJC3Q8NFK1 279 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 NMNAT2Q9BZQ4 307 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms