RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 RFPL4AA6NLU0 287 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 OR5K4A6NMS3 321 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 RFPL4AL1F8VTS6 287 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TOR1AO14656 332 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TMEM127O75204 238 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CLPSP04118 112 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CD1CP29017 333 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 NR0B1P51843 470 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TAS2R19P59542 299 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 SKP1P63208 163 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 EIF2B1Q14232 305 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 GLT8D1Q68CQ7 371 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TTLL10Q6ZVT0 673 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 RHOUQ7L0Q8 258 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 DEFB119Q8N690 84 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF784Q8NCA9 323 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CHST4Q8NCG5 386 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 OR52H1Q8NGJ2 320 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CASTOR1Q8WTX7 329 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 MRPS24Q96EL2 167 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TGM7Q96PF1 710 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CENPMQ9NSP4 180 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 EPHA6Q9UF33 1036 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 MSRAQ9UJ68 235 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 GMEB2Q9UKD1 530 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 KIF26BQ2KJY2 2108 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF736B4DX44 427 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 EIF1AYO14602 144 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 BET1O15155 118 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 NSA2O95478 260 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 GUSBP08236 651 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 GABRG2P18507 467 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 MPGP29372 298 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC37A1P57057 533 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ACTBP60709 375 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ACTG1P63261 375 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CXADRP78310 365 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 IGLV3-21P80748 117 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ATPAF1Q5TC12 328 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC18B1Q6NT16 456 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 LINC00346Q8IVM7 164 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 PXT1Q8NFP0 134 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 OR6K3Q8NGY3 331 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CCDC107Q8WV48 283 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 LIPHQ8WWY8 451 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 MTIF3Q9H2K0 278 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CKLFQ9UBR5 152 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 COA3Q9Y2R0 106 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 PRSS37A4D1T9 235 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 C2orf72A6NCS6 295 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 IL33O95760 270 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 HPP00738 406 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ITGB2P05107 769 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 DNASE1L1P49184 302 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 AKR1C2P52895 323 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 HSD17B7P56937 341 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 AKR1C1Q04828 323 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 ZP2Q05996 745 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 DHRS2Q13268 280 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC22A6Q4U2R8 563 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 EMC4Q5J8M3 183 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 C3orf33Q6P1S2 294 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 TFAP2EQ6VUC0 442 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 RNF128Q8TEB7 428 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 RLN3Q8WXF3 142 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC6A7Q99884 636 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 MED9Q9NWA0 146 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 DHCR7Q9UBM7 475 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CYP8B1Q9UNU6 501 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 PIAS3Q9Y6X2 628 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 CABIN1Q9Y6J0 2220 aa8.33□□□□□ -1.08
LIMCH1-215ENST00000512632 EPOPA6NHQ4 379 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 SOX1O00570 391 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 PMS2P2O95744 297 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 HLA-AP01891 365 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 NAT1P18440 290 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 CALCRP30988 508 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 PPICP45877 212 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 RIDAP52758 137 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 FOXL2P58012 376 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 DLX2Q07687 328 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 FZD2Q14332 565 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 CORO6Q6QEF8 472 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 GVQW1Q8N7I0 195 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC41A2Q96JW4 573 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC38A3Q99624 504 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 UPB1Q9UBR1 384 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 A0A1W2PPC1 479 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 PCP4L1A6NKN8 68 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 HLA-DOBP13765 273 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 CD34P28906 385 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 AVPR2P30518 371 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 RABIFP47224 123 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 CDNFQ49AH0 187 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 OR52W1Q6IF63 320 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 HSD17B13Q7Z5P4 300 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF578Q96N58 590 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 TBL1XR1Q9BZK7 514 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 LDAHQ9H6V9 325 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 COMMD9Q9P000 198 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms