RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMEM45BQ96B21 275 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 KCNK17Q96T54 332 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 RHNO1Q9BSD3 238 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ASCL3Q9NQ33 180 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ACOXLQ9NUZ1 547 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 TRAV1-2A0A0B4J238 106 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 A0A0J9YW62 118 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ZNF724A8MTY0 619 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ADAM11O75078 769 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ALOX5APP20292 161 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 MRPS10P82664 201 aaKnown RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 LTBQ06643 244 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 HACD4Q5VWC8 232 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 LAIR2Q6ISS4 152 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 DOK3Q7L591 496 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 COX4I2Q96KJ9 171 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 ABHD6Q9BV23 337 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 NAA50Q9GZZ1 169 aaKnown RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 NKIRAS2Q9NYR9 191 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 GDF2Q9UK05 429 aaPredicted RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 V9GY05 133 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 OR6C6A6NF89 314 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 MS4A18H0YCH9 400 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 OGG1O15527 345 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 EFSO43281 561 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 FZD7O75084 574 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 SERPINA5P05154 406 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 TGFBR2P37173 567 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 HTR5AP47898 357 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 CTAG1AP78358 180 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 GFOD2Q3B7J2 385 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 MS4A18Q3C1V0 323 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 FOXB2Q5VYV0 432 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 PIAS4Q8N2W9 510 aaPredicted RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 ROBO4Q8WZ75 1007 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 TSSK2Q96PF2 358 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 DCLRE1CQ96SD1 692 aaKnown RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 TSPAN10Q9H1Z9 355 aaPredicted RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 RGCCQ9H4X1 137 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 LSM2Q9Y333 95 aaKnown RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 NOP16Q9Y3C1 178 aaKnown RBP7.47□□□□□ -1.21
USP54-215ENST00000497106 ETV7Q9Y603 341 aa7.47□□□□□ -1.21
USP54-215ENST00000497106 SEC16AO15027 2179 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 ZIC3O60481 467 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 UBL3O95164 117 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 HCKP08631 526 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 CST2P09228 141 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 CTLA4P16410 223 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 GALK2Q01415 458 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 NHLH1Q02575 133 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 CLN3Q13286 438 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 ELFN2Q5R3F8 820 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 RIPPLY2Q5TAB7 128 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 RHOUQ7L0Q8 258 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 ASCL5Q7RTU5 278 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 SYT9Q86SS6 491 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 GDPD1Q8N9F7 314 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 ZFP62Q8NB50 900 aaPredicted RBP7.46□□□□□ -1.21
USP54-215ENST00000497106 OR52H1Q8NGJ2 320 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 SLC25A46Q96AG3 418 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 FOXB1Q99853 325 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 ABCB10Q9NRK6 738 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 PROCRQ9UNN8 238 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 B3GNT3Q9Y2A9 372 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 SPEF1Q9Y4P9 236 aa7.46□□□□□ -1.21
USP54-215ENST00000497106 PRKXP51817 358 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 PPP5CP53041 499 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 EFNB1P98172 346 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 ZNF85Q03923 595 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 MZT1Q08AG7 82 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 Q0VFX4 171 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 SSX8Q7RTT4 187 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 JAGN1Q8N5M9 183 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 GMPPAQ96IJ6 420 aaPredicted RBP7.46□□□□□ -1.22
USP54-215ENST00000497106 ZFP3Q96NJ6 502 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 TRIB1Q96RU8 372 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 KCNJ15Q99712 375 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 NUP210LQ5VU65 1888 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 OR14I1A6ND48 311 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 DOK2O60496 412 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 CYTIPO60759 359 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 GPX5O75715 221 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 IL2RAP01589 272 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 LCATP04180 440 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 STARP49675 285 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 TNFSF10P50591 281 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 EFNA3P52797 238 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 CTF1Q16619 201 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 OR2G2Q8NGZ5 317 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 SIGLEC11Q96RL6 698 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 ATF6BQ99941 703 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 RNF122Q9H9V4 155 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 SH2D2AQ9NP31 389 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 POLE4Q9NR33 117 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 ASXL3Q9C0F0 2248 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 IGHV3-15A0A0B4J1V0 119 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 FAM25EA8MYX2 175 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 TPOP07202 933 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 CD79AP11912 226 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 PRKACBP22694 351 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms