RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ABHD4Q8TB40 342 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 THEM6Q8WUY1 208 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 HMG20AQ9NP66 347 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 ING1Q9UK53 422 aaPredicted RBP12.59□□□□□ -0.39
CUX1-209ENST00000487284 CACNA1BQ00975 2339 aa12.59□□□□□ -0.39
CUX1-209ENST00000487284 NCOA6Q14686 2063 aaPredicted RBP12.58□□□□□ -0.39
CUX1-209ENST00000487284 IGHV3-15A0A0B4J1V0 119 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 NPIPA2E9PIF3 369 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 NPIPA3F8WFD2 350 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 DVL2O14641 736 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 MPZL1O95297 269 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 CRYABP02511 175 aaKnown RBP12.58□□□□□ -0.4
CUX1-209ENST00000487284 CLEC2LP0C7M8 214 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 NR2C1P13056 603 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 ENPP1P22413 925 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 CLDN15P56746 228 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 CARD18P57730 90 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 NANOS3P60323 173 aaKnown RBP12.58□□□□□ -0.4
CUX1-209ENST00000487284 KLRB1Q12918 225 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 ZNF846Q147U1 533 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 ABLIM2Q6H8Q1 611 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 FAM180AQ6UWF9 173 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 CISD2Q8N5K1 135 aaKnown RBP12.58□□□□□ -0.4
CUX1-209ENST00000487284 OR10D3Q8NH80 312 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 BORCS5Q969J3 196 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 ABTB1Q969K4 478 aaPredicted RBP12.58□□□□□ -0.4
CUX1-209ENST00000487284 SLC24A3Q9HC58 644 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 PLSCR2Q9NRY7 297 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 IKZF2Q9UKS7 526 aa12.58□□□□□ -0.4
CUX1-209ENST00000487284 IQCMA0A1B0GVH7 501 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 SHISA3A0PJX4 238 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZNHIT1O43257 154 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 CXCL13O43927 109 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 AQP8O94778 261 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ACTL6AO96019 429 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 SERPINA3P01011 423 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 BMP4P12644 408 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZNF823P16415 610 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZNF708P17019 499 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 LAP3P28838 519 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 MTNR1BP49286 362 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZNF133P52736 654 aaPredicted RBP12.57□□□□□ -0.4
CUX1-209ENST00000487284 CLDN18P56856 261 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 RPS11P62280 158 aaKnown RBP eCLIP12.57□□□□□ -0.4
CUX1-209ENST00000487284 MXD1Q05195 221 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 C3AR1Q16581 482 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 OTPQ5XKR4 325 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 FDX2Q6P4F2 183 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 KCTD18Q6PI47 426 aaPredicted RBP12.57□□□□□ -0.4
CUX1-209ENST00000487284 TMEM123Q8N131 208 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZIC4Q8N9L1 334 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 OR52N5Q8NH56 324 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 HSD17B8Q92506 261 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 TMEM54Q969K7 222 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 OR2M2Q96R28 347 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ABHD6Q9BV23 337 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 WDR12Q9GZL7 423 aaKnown RBP12.57□□□□□ -0.4
CUX1-209ENST00000487284 C6orf62Q9GZU0 229 aaPredicted RBP12.57□□□□□ -0.4
CUX1-209ENST00000487284 SMURF1Q9HCE7 757 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 SLCO1C1Q9NYB5 712 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 CRNNQ9UBG3 495 aaPredicted RBP12.57□□□□□ -0.4
CUX1-209ENST00000487284 PEX16Q9Y5Y5 336 aa12.57□□□□□ -0.4
CUX1-209ENST00000487284 ZNF716A6NP11 495 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZNF432O94892 652 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 SFTPCP11686 197 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 HNRNPA0Q13151 305 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 ALKBH1Q13686 389 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 EIF2B1Q14232 305 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 KCNMB1Q16558 191 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ACSM3Q53FZ2 586 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PRR30Q53SZ7 412 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 PDSS1Q5T2R2 415 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 CARD17Q5XLA6 110 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PAMR1Q6UXH9 720 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZNF679Q8IYX0 411 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 OR13C5Q8NGS8 318 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ST7LQ8TDW4 575 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 C11orf40Q8WZ69 217 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 NSMAFQ92636 917 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 MCHR2Q969V1 340 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 CPNE4Q96A23 557 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 MAP6Q96JE9 813 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZNF385AQ96PM9 386 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 TPK1Q9H3S4 243 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PALMDQ9NP74 551 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 TIGARQ9NQ88 270 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PLEKHB1Q9UF11 243 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 KALRNO60229 2985 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ARHGAP21Q5T5U3 1957 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 A0A1B0GVC2 190 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 CASKO14936 926 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 GATBO75879 557 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 RPP14O95059 124 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZFPL1O95159 310 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 WNT11O96014 354 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 S100A5P33763 92 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 EIF1AXP47813 144 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 CSNK1A1P48729 337 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 SRYQ05066 204 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms