RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SERPINA1P01009 418 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 NGFP01138 241 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 SCG5P05408 212 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 RPL4P36578 427 aaKnown RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 MMP15P51511 669 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 RAP1BP61224 184 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 PPP1CBP62140 327 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 RAP1AP62834 184 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 TEKQ02763 1124 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 ENDOGQ14249 297 aaKnown RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 FAHD2BQ6P2I3 314 aaPredicted RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 FOXL2NBQ6ZUU3 175 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 FKBP9P1Q75LS8 142 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 RP9Q8TA86 221 aaKnown RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 KLF14Q8TD94 323 aaPredicted RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 ACOT11Q8WXI4 607 aaPredicted RBP18.33■□□□□ 0.52
USP40-215ENST00000484528 FAHD2AQ96GK7 314 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 WIPI2Q9Y4P8 454 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 TIMM10BQ9Y5J6 103 aa18.33■□□□□ 0.52
USP40-215ENST00000484528 DYSFO75923 2080 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 PLSCR5A0PG75 271 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 HTR3EA5X5Y0 456 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 CDC42EP2O14613 210 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 PRSS23O95084 383 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 NCK1P16333 377 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 MSR1P21757 451 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 GUCA1AP43080 201 aaPredicted RBP18.32■□□□□ 0.52
USP40-215ENST00000484528 SLC9A3P48764 834 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 GSK3BP49841 420 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 HFEQ30201 348 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 OTPQ5XKR4 325 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 CBLL1Q75N03 491 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 ALDH16A1Q8IZ83 802 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.32■□□□□ 0.52
USP40-215ENST00000484528 FNDC8Q8TC99 324 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 ELMOD3Q96FG2 381 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 Q96M85 177 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 AP3M1Q9Y2T2 418 aa18.32■□□□□ 0.52
USP40-215ENST00000484528 TRAV20A0A0B4J274 112 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 MPZL1O95297 269 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 ZNF26P17031 533 aaPredicted RBP18.31■□□□□ 0.52
USP40-215ENST00000484528 PCBD1P61457 104 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 SPRNQ5BIV9 151 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 MESTQ5EB52 335 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 MBNL2Q5VZF2 373 aaKnown RBP18.31■□□□□ 0.52
USP40-215ENST00000484528 MBOAT2Q6ZWT7 520 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 TREML1Q86YW5 311 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 CCL17Q92583 94 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 CCDC134Q9H6E4 229 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 POLE4Q9NR33 117 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 ANK2Q01484 3957 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 TENM1Q9UKZ4 2725 aa18.31■□□□□ 0.52
USP40-215ENST00000484528 PLPP2O43688 288 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 DEAF1O75398 565 aaPredicted RBP18.3■□□□□ 0.52
USP40-215ENST00000484528 VENTXO95231 258 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 PNPP00491 289 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 FAM209AQ5JX71 171 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 ACSM5Q6NUN0 579 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 UNQ6126/PRO20091Q6UXV3 157 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 C1orf229Q6ZS94 237 aaPredicted RBP18.3■□□□□ 0.52
USP40-215ENST00000484528 FAM162AQ96A26 154 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 RAB39BQ96DA2 213 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 TIMD4Q96H15 378 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 FAM46AQ96IP4 442 aaKnown RBP18.3■□□□□ 0.52
USP40-215ENST00000484528 POFUT1Q9H488 388 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 MSL2Q9HCI7 577 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 GRHPRQ9UBQ7 328 aa18.3■□□□□ 0.52
USP40-215ENST00000484528 LOC105371242A0A075B767 164 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 ISPDA4D126 451 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 C12orf71A8MTZ7 269 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 AVPP01185 164 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 IGHV2-5P01817 119 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 RBMXP38159 391 aaKnown RBP18.29■□□□□ 0.52
USP40-215ENST00000484528 NUDT2P50583 147 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 ANKDD1AQ495B1 522 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 TSEN54Q7Z6J9 526 aaKnown RBP18.29■□□□□ 0.52
USP40-215ENST00000484528 RNF113BQ8IZP6 322 aaKnown RBP18.29■□□□□ 0.52
USP40-215ENST00000484528 RAB1CQ92928 201 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 RASD2Q96D21 266 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 C4orf45Q96LM5 186 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 ZNF570Q96NI8 536 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 GAL3ST1Q99999 423 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 RERGLQ9H628 205 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 G6PC2Q9NQR9 355 aa18.29■□□□□ 0.52
USP40-215ENST00000484528 XKRYO14609 159 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 TIMM8AO60220 97 aaPredicted RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 DOK2O60496 412 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 ABHD16AO95870 558 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 CD14P08571 375 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 HTR5AP47898 357 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 ZBED5Q49AG3 693 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 C8orf82Q6P1X6 216 aaPredicted RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 TMPRSS11FQ6ZWK6 438 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 RRM2BQ7LG56 351 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 SLC7A13Q8TCU3 470 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 HOPXQ9BPY8 73 aaPredicted RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 KCTD14Q9BQ13 255 aaPredicted RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 EFCAB1Q9HAE3 211 aa18.28■□□□□ 0.52
USP40-215ENST00000484528 NMNAT1Q9HAN9 279 aaPredicted RBP18.28■□□□□ 0.52
USP40-215ENST00000484528 ELOVL3Q9HB03 270 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms