RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 EVX1P49640 407 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF84P51523 738 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 RPS23P62266 143 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 GGTLC2Q14390 218 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 RAB39AQ14964 217 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 CARTPTQ16568 116 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 HIST3H3Q16695 136 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 RNF151Q2KHN1 245 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC36A2Q495M3 483 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 C6orf52Q5T4I8 152 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 CYB5R2Q6BCY4 276 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM53Q6P2H8 277 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 KRT77Q7Z794 578 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 HIPK1Q86Z02 1210 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SKA3Q8IX90 412 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 CDK20Q8IZL9 346 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF540Q8NDQ6 660 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 OR4K5Q8NGD3 323 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 LIPHQ8WWY8 451 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 GEMIN6Q8WXD5 167 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 ASB10Q8WXI3 467 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 MCHR2Q969V1 340 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 MRPL24Q96A35 216 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 BPIFA2Q96DR5 249 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 FAM210AQ96ND0 272 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SEPHS2Q99611 448 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 DOK1Q99704 481 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SH3GL3Q99963 347 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 HOPXQ9BPY8 73 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 FNDC11Q9BVV2 318 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 MRPL13Q9BYD1 178 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 C1orf198Q9H425 327 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 RNF121Q9H920 327 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 EFCAB1Q9HAE3 211 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM38BQ9NVV0 291 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 CMTM6Q9NX76 183 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC7A8Q9UHI5 535 aa5.85□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM129A0AVI4 362 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC22A23A1A5C7 686 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SH3PXD2BA1X283 911 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 GMNCA6NCL1 334 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 NPIPB13A6NJU9 1138 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 NPIPB4C9JG80 1138 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 M0R233 179 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 CXCR6O00574 342 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ATP8B1O43520 1251 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SYNGR3O43761 229 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 MGRN1O60291 552 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 PIP5K1CO60331 668 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TRMUO75648 421 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF682O95780 498 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 PTHP01270 115 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IFNA2P01563 188 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ADRA2AP08913 450 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TSPAN19P0C672 248 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 PATE4P0C8F1 98 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IGHV4-31P0DP07 118 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SAGP10523 405 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IFI30P13284 250 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 DAOP14920 347 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 GLRXP35754 106 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 GZMKP49863 264 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 NUDT2P50583 147 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC7A2P52569 658 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF133P52736 654 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 MYBPC1Q00872 1141 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 LIPEQ05469 1076 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 RUNX1T1Q06455 604 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TRAM2Q15035 370 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TAF11Q15544 211 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TBC1D28Q2M2D7 210 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 CHRFAM7AQ494W8 412 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IQCCQ4KMZ1 466 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IFI44LQ53G44 452 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ALG10Q5BKT4 473 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ARMC4Q5T2S8 1044 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 FAM205BPQ63HN1 556 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 C8orf82Q6P1X6 216 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 HACD2Q6Y1H2 254 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 FKBP9P1Q75LS8 142 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC16A14Q7RTX9 510 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 VTCN1Q7Z7D3 282 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF584Q8IVC4 421 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC15A3Q8IY34 581 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 OFCC1Q8IZS5 231 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 STPG3Q8N7X2 389 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SYT14Q8NB59 555 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 RBM15BQ8NDT2 890 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC30A7Q8NEW0 376 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 OR1J2Q8NGS2 313 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 MOSPD2Q8NHP6 518 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 FGFBP3Q8TAT2 258 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 CMTM5Q96DZ9 223 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 FOXN4Q96NZ1 517 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF347Q96SE7 839 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 KCTD14Q9BQ13 255 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 MRPL37Q9BZE1 423 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 BPESC1Q9GZL8 116 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 LRMDAQ9H2I8 198 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 KCNN2Q9H2S1 579 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms