RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DVL1O14640 695 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 RAD51CO43502 376 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 ADAM20O43506 726 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 NPHS1O60500 1241 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 FAM20BO75063 409 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 E2F6O75461 281 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 CRCPO75575 148 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 CLIC3O95833 236 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 C6orf47O95873 294 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 LAMP1P11279 417 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 JUNBP17275 347 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 NCF2P19878 526 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 KITLGP21583 273 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 RPS4Y1P22090 263 aaKnown RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 CBLP22681 906 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 CXCR1P25024 350 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 STOMP27105 288 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 MAPK1P28482 360 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 HMOX2P30519 316 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 GRPRP30550 384 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 SPRP35270 261 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 UBE2E1P51965 193 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TPM4P67936 248 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 FAM153CQ494X1 144 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 ZMAT1Q5H9K5 638 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 KHDC1LQ5JSQ8 128 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 LDLRAD2Q5SZI1 272 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 MRPL2Q5T653 305 aaKnown RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 IL23RQ5VWK5 629 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 ATG16L1Q676U5 607 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 SFRP4Q6FHJ7 346 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 CFAP161Q6P656 301 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 ARL9Q6T311 187 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 C16orf89Q6UX73 402 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 GPRIN3Q6ZVF9 776 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 OR5AS1Q8N127 324 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 C10orf111Q8N326 155 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 RBM15BQ8NDT2 890 aaKnown RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 OR7A2PQ8NGA2 310 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 OR56A1Q8NGH5 318 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 OR51G2Q8NGK0 314 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 OR1J2Q8NGS2 313 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 OR6N1Q8NGY5 312 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 AKR7LQ8NHP1 331 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 FAM76AQ8TAV0 307 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 FBXO25Q8TCJ0 367 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 DCAKDQ8WVC6 231 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TMEM54Q969K7 222 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TMEM237Q96Q45 408 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 ZNF649Q9BS31 505 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 KRTAP3-3Q9BYR6 98 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 KRTAP3-2Q9BYR7 98 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TRIM5Q9C035 493 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 MMADHCQ9H3L0 296 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 C1orf198Q9H425 327 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 RAB18Q9NP72 206 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TRIM36Q9NQ86 728 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 RRAGDQ9NQL2 400 aaPredicted RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 ETAA1Q9NY74 926 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TCF19Q9Y242 345 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 WDR45Q9Y484 360 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 SNX5Q9Y5X3 404 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 SRRM2Q9UQ35 2752 aaKnown RBP3.81□□□□□ -1.8
USP4-209ENST00000475873 IQCMA0A1B0GVH7 501 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 A0A1B0GWJ7 208 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 WDR91A4D1P6 747 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CFAP73A6NFT4 308 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 LRRN3E7EW58 273 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 IFNL4K9M1U5 179 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 FBP2O00757 339 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 SLC25A17O43808 307 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 AHSA1O95433 338 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 SELLP14151 372 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 ZNF32P17041 273 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 TNFSF4P23510 183 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 AHCYP23526 432 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 EEF1B2P24534 225 aaKnown RBP3.8□□□□□ -1.8
USP4-209ENST00000475873 ARRB2P32121 409 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 APLNRP35414 380 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CSNK1A1P48729 337 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 RAD23AP54725 363 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 HBA1P69905 142 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRR20EP86478 221 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRR20CP86479 221 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRR20DP86480 221 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRR20BP86481 221 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRR20AP86496 221 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PSG4Q00888 419 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 GUCA2AQ02747 115 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 ACSM1Q08AH1 577 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 POU4F2Q12837 409 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 MAB21L1Q13394 359 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 MPPED2Q15777 294 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 AANATQ16613 207 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 GRTP1Q5TC63 336 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 MROH9Q5TGP6 573 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 NXNQ6DKJ4 435 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CAVIN1Q6NZI2 390 aaKnown RBP3.8□□□□□ -1.8
USP4-209ENST00000475873 TMEM53Q6P2H8 277 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 KCTD18Q6PI47 426 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms