RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 FDX2Q6P4F2 183 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 FAM180AQ6UWF9 173 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 PAMR1Q6UXH9 720 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 P4HA3Q7Z4N8 544 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 ABHD12BQ7Z5M8 362 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-205ENST00000473099 KRT77Q7Z794 578 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 ADGRE4PQ86SQ3 457 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 RFLNBQ8N5W9 214 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 FNDC9Q8TBE3 224 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 RPS4Y2Q8TD47 263 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 SMAP2Q8WU79 429 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-205ENST00000473099 THRSPQ92748 146 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 EXTL1Q92935 676 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 SMIM19Q96E16 107 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 TAAR6Q96RI8 345 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 ABHD6Q9BV23 337 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 DCSTAMPQ9H295 470 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 SLCO5A1Q9H2Y9 848 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 C1orf198Q9H425 327 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 NIPAL2Q9H841 368 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 CYB5R1Q9UHQ9 305 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 ST6GALNAC2Q9UJ37 374 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 ING1Q9UK53 422 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-205ENST00000473099 LHX6Q9UPM6 363 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 UGT2A1Q9Y4X1 527 aa11.35□□□□□ -0.59
VPS13D-205ENST00000473099 TRBV2A0A0J9YWF9 115 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 GPX5O75715 221 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 RGS9O75916 674 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 ABHD16AO95870 558 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 OR8G3PP0DMU2 310 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 NR4A1P22736 598 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 EDNRAP25101 427 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 DCTDP32321 178 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 GDI2P50395 445 aaKnown RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 NCS1P62166 190 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 LSM3P62310 102 aaKnown RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 CXADRP78310 365 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 AQP6Q13520 282 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 SPCS2Q15005 226 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 MEP1BQ16820 701 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 DGUOKQ16854 277 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 PLEKHN1Q494U1 663 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 LIPNQ5VXI9 398 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 ARL9Q6T311 187 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 DCXRQ7Z4W1 244 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 ST7LQ8TDW4 575 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 PHYHIPQ92561 330 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 RPL3LQ92901 407 aaKnown RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 GMPPAQ96IJ6 420 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 KCTD7Q96MP8 289 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 FOXN4Q96NZ1 517 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 RBM24Q9BX46 236 aaKnown RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 TTTY10Q9BZA0 68 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 ACOXLQ9NUZ1 547 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 CLCF1Q9UBD9 225 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 MRM2Q9UI43 246 aaKnown RBP11.34□□□□□ -0.59
VPS13D-205ENST00000473099 KLHDC2Q9Y2U9 406 aa11.34□□□□□ -0.59
VPS13D-205ENST00000473099 PNMA8CA0A1B0GUJ8 204 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF878C9JN71 531 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 RPL36A-HNRNPH2H7BZ11 118 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 UPK3AO75631 287 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 KRT33AO76009 404 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 MPZL1O95297 269 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 GABRA1P14867 456 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 PCSK6P29122 969 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 PTGER4P35408 488 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 CCR9P51686 369 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 RPS25P62851 125 aaKnown RBP11.33□□□□□ -0.6
VPS13D-205ENST00000473099 ALKBH1Q13686 389 aaKnown RBP11.33□□□□□ -0.6
VPS13D-205ENST00000473099 C3AR1Q16581 482 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 FAM27BQ5VT28 67 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 OR2A2Q6IF42 318 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 LINC00299Q6ZSB3 139 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-205ENST00000473099 ZFP41Q8N8Y5 198 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 DYNC2LI1Q8TCX1 351 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 RNF133Q8WVZ7 376 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 APH1AQ96BI3 265 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 GPR137Q96N19 417 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 DCUN1D5Q9BTE7 237 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 CENPOQ9BU64 300 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 TMED9Q9BVK6 235 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 COMMD4Q9H0A8 199 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 CALHM2Q9HA72 323 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 ELOVL3Q9HB03 270 aa11.33□□□□□ -0.6
VPS13D-205ENST00000473099 TXNL4BQ9NX01 149 aaKnown RBP11.33□□□□□ -0.6
VPS13D-205ENST00000473099 A0A1B0GTH9 108 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 TMEM212A6NML5 194 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF587BE7ETH6 402 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 E9PI62 339 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 GABRPO00591 440 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 GATBO75879 557 aaKnown RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 IL1AP01583 271 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 HOXD4P09016 255 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 CST2P09228 141 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 H2BFMP0C1H6 154 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF182P17025 639 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SOX6P35712 828 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 RPS27P42677 84 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms