RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 IGHV2-5P01817 119 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 EPHA1P21709 976 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 MMP15P51511 669 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 PPP1CBP62140 327 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 TRAM2Q15035 370 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 ANKDD1AQ495B1 522 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 ZMAT1Q5H9K5 638 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 OAFQ86UD1 273 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 NRMQ8IXM6 262 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 OR51A7Q8NH64 312 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 CCL17Q92583 94 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 GAL3ST1Q99999 423 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 FNDC11Q9BVV2 318 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 ELOVL3Q9HB03 270 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 RHCGQ9UBD6 479 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 TIMM10BQ9Y5J6 103 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 LOC105371242A0A075B767 164 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 ISPDA4D126 451 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 EFCAB9A8MZ26 197 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 SLC22A2O15244 555 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 MSR1P21757 451 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 LIPAP38571 399 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 YAP1P46937 504 aaKnown RBP16.78■□□□□ 0.28
COL9A3-210ENST00000472880 ARHGDIAP52565 204 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 ACTG1P63261 375 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 SLC3A1Q07837 685 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 TMEM255AQ5JRV8 349 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 FOXL2NBQ6ZUU3 175 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 ARPINQ7Z6K5 226 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 LRRC75AQ8NAA5 344 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 OR13C2Q8NGS9 318 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 RCN3Q96D15 328 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 PCDHB10Q9UN67 800 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 AP3M1Q9Y2T2 418 aa16.78■□□□□ 0.28
COL9A3-210ENST00000472880 C12orf71A8MTZ7 269 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ICMTO60725 284 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ZNF682O95780 498 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 SLC9A3P48764 834 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 PRKCDQ05655 676 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 DCAF12L2Q5VW00 463 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ZNF774Q6NX45 483 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ARL9Q6T311 187 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ZNF771Q7L3S4 317 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-210ENST00000472880 C1QL2Q7Z5L3 287 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 VTCN1Q7Z7D3 282 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 PEG10Q86TG7 708 aaKnown RBP16.77■□□□□ 0.28
COL9A3-210ENST00000472880 GEMIN6Q8WXD5 167 aaKnown RBP16.77■□□□□ 0.28
COL9A3-210ENST00000472880 C4orf45Q96LM5 186 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 DIRC2Q96SL1 478 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 MAN2C1Q9NTJ4 1040 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ARMCX1Q9P291 453 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 ZDHHC8Q9ULC8 765 aa16.77■□□□□ 0.28
COL9A3-210ENST00000472880 NDRG4Q9ULP0 352 aaKnown RBP16.77■□□□□ 0.28
COL9A3-210ENST00000472880 H7C1C5 153 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 J3KTA2 159 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 J3QLI3 93 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 TIMM8AO60220 97 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-210ENST00000472880 NGFP01138 241 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 ADH4P08319 380 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 FUT4P22083 530 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 RPL4P36578 427 aaKnown RBP16.76■□□□□ 0.27
COL9A3-210ENST00000472880 LCN6P62502 163 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 ENDOGQ14249 297 aaKnown RBP16.76■□□□□ 0.27
COL9A3-210ENST00000472880 ZNF730Q6ZMV8 503 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 C1orf229Q6ZS94 237 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-210ENST00000472880 SYT9Q86SS6 491 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 ACOT11Q8WXI4 607 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-210ENST00000472880 TMPRSS13Q9BYE2 586 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 NDEL1Q9GZM8 345 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 POLE4Q9NR33 117 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 SNX13Q9Y5W8 968 aa16.76■□□□□ 0.27
COL9A3-210ENST00000472880 XKRYO14609 159 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 GSTA4O15217 222 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 CCDC22O60826 627 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 UBOX5O94941 541 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 ABHD16AO95870 558 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 AVPP01185 164 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 GSTM3P21266 225 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 GPR4P46093 362 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 HILS1P60008 231 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 IFI44LQ53G44 452 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 MTX3Q5HYI7 312 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 USP43Q70EL4 1123 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 ZER1Q7Z7L7 766 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 RNF113BQ8IZP6 322 aaKnown RBP16.75■□□□□ 0.27
COL9A3-210ENST00000472880 POU5F2Q8N7G0 328 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 NPEPL1Q8NDH3 523 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 JMJD8Q96S16 334 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 WACQ9BTA9 647 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 MSL2Q9HCI7 577 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 CMTM6Q9NX76 183 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 UBAP1Q9NZ09 502 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 GRHPRQ9UBQ7 328 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 TANC2Q9HCD6 1990 aa16.75■□□□□ 0.27
COL9A3-210ENST00000472880 TRIM77I1YAP6 450 aa16.74■□□□□ 0.27
COL9A3-210ENST00000472880 CXCR6O00574 342 aa16.74■□□□□ 0.27
COL9A3-210ENST00000472880 DOK2O60496 412 aa16.74■□□□□ 0.27
COL9A3-210ENST00000472880 CD55P08174 381 aa16.74■□□□□ 0.27
COL9A3-210ENST00000472880 GATA3P23771 443 aa16.74■□□□□ 0.27
COL9A3-210ENST00000472880 HTR5AP47898 357 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms