RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 IPCEF1Q8WWN9 437 aaPredicted RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 FAM46AQ96IP4 442 aaKnown RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 POM121L2Q96KW2 1035 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 MYLK2Q9H1R3 596 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 SAP30LQ9HAJ7 183 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 NMNAT1Q9HAN9 279 aaPredicted RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 POLE4Q9NR33 117 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 DECR2Q9NUI1 292 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 NKIRAS2Q9NYR9 191 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 ADA2Q9NZK5 511 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 EGFL7Q9UHF1 273 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 NDRG4Q9ULP0 352 aaKnown RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 ADAM18Q9Y3Q7 739 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 TIMM10BQ9Y5J6 103 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 LOC100509620A0A075B734 347 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 TEX13CA0A0J9YWL9 993 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 A0A1W2PRQ8 180 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 PLSCR5A0PG75 271 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 B4DSR2 109 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 H3BSA7 217 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 ATP8B1O43520 1251 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 DOK2O60496 412 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 CDC14BO60729 498 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 RP2O75695 350 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 NDUFB2O95178 105 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 IGHV3-13P01766 116 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 RHCEP18577 417 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 WNT5AP41221 380 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 ARHGDIAP52565 204 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 DVL1P1P54792 670 aaPredicted RBP11.91□□□□□ -0.5
USP4-206ENST00000461553 TMEM33P57088 247 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 SCRN3Q0VDG4 424 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 DGCR6Q14129 220 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 KRT72Q14CN4 511 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 MESTQ5EB52 335 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 RINLQ6ZS11 566 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 SYT9Q86SS6 491 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 SLC25A40Q8TBP6 338 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 SLC7A13Q8TCU3 470 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 C1orf159Q96HA4 380 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 Q96M85 177 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 WNT5BQ9H1J7 359 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 ELOVL3Q9HB03 270 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 CGGBP1Q9UFW8 167 aaPredicted RBP11.91□□□□□ -0.5
USP4-206ENST00000461553 TMEFF2Q9UIK5 374 aaPredicted RBP11.91□□□□□ -0.5
USP4-206ENST00000461553 AURKCQ9UQB9 309 aa11.91□□□□□ -0.5
USP4-206ENST00000461553 DYSFO75923 2080 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 IGHV1-69-2A0A0G2JMI3 117 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 PRSS37A4D1T9 235 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 CLDN25C9JDP6 229 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 AHCYL1O43865 530 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 ABHD16AO95870 558 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 SDHAP31040 664 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 SRP14P37108 136 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 HTR5AP47898 357 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 LIMS1P48059 325 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 ZNF81P51508 661 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 PPP1CBP62140 327 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 ENDOGQ14249 297 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 TSTQ16762 297 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 ZMAT1Q5H9K5 638 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 FAM209AQ5JX71 171 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 MBNL2Q5VZF2 373 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 GLYATQ6IB77 296 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 ZNF774Q6NX45 483 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 ARL9Q6T311 187 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 USP51Q70EK9 711 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 FAM122BQ7Z309 247 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 OR51F2Q8NH61 342 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 GTF3AQ92664 365 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 RASD2Q96D21 266 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 RSRC1Q96IZ7 334 aaKnown RBP11.9□□□□□ -0.5
USP4-206ENST00000461553 WACQ9BTA9 647 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 OR2J1Q9GZK6 312 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 EMC7Q9NPA0 242 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 NDUFAF4Q9P032 175 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 MAGEL2Q9UJ55 1249 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 V9GYQ6 96 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 FBN3Q75N90 2809 aa11.9□□□□□ -0.5
USP4-206ENST00000461553 SNX3O60493 162 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 ICMTO60725 284 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 MSMBP08118 114 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 GAAP10253 952 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 ITGA2P17301 1181 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 GSTM3P21266 225 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 LIPAP38571 399 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 MPV17P39210 176 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 AQP6Q13520 282 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 HFEQ30201 348 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 GPR139Q6DWJ6 353 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 CPLX4Q7Z7G2 160 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 ADCK1Q86TW2 530 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 RNF148Q8N7C7 305 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 NPEPL1Q8NDH3 523 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 FANK1Q8TC84 345 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 KLF14Q8TD94 323 aaPredicted RBP11.89□□□□□ -0.51
USP4-206ENST00000461553 TMEM186Q96B77 213 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 RAB39BQ96DA2 213 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 ELMOD3Q96FG2 381 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 MARS2Q96GW9 593 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms