RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 F5H697 171 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 AIPO00170 330 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MRASO14807 208 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ARPC1BO15143 372 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CTDSPLO15194 276 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MSH4O15457 936 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MT-CO2P00403 227 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 APOC3P02656 99 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 IRF2P14316 349 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 COX7A2P14406 83 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 FOLR1P15328 257 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 OMGP23515 440 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 GJB2P29033 226 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 GGT2P36268 569 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CRISP1P54107 249 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 DCDP81605 110 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZP4Q12836 540 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CLINT1Q14677 625 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC10A1Q14973 349 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TAF9Q16594 264 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PLPPR5Q32ZL2 321 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM153CQ494X1 144 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CYBRD1Q53TN4 286 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CARD16Q5EG05 197 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TPRG1LQ5T0D9 272 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ASPHD2Q6ICH7 369 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF585AQ6P3V2 769 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SSX6Q7RTT6 188 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CLNKQ7Z7G1 428 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 LINC01551Q86U37 167 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CCDC190Q86UF4 302 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PIGZQ86VD9 579 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 LRRC28Q86X40 367 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 IZUMO1Q8IYV9 350 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SMIM20Q8N5G0 67 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 UBAC2Q8NBM4 344 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4C5Q8NGB2 326 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 OR14A16Q8NHC5 309 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 C1orf54Q8WWF1 131 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ATG4AQ8WYN0 398 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 HYLS1Q96M11 299 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SDHCQ99643 169 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ARHGDIGQ99819 225 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC6A7Q99884 636 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 C16orf70Q9BSU1 422 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 LMF2Q9BU23 707 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PRO1933Q9H354 126 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SYNPO2LQ9H987 977 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 LMAN1LQ9HAT1 526 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 Q9N2K0 584 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PCYOX1Q9UHG3 505 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 FBXW11Q9UKB1 542 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 UFC1Q9Y3C8 167 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CSDC2Q9Y534 153 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TRANK1O15050 2925 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MYH7BA7E2Y1 1941 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 WDFY4Q6ZS81 3184 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 LOC105371242A0A075B767 164 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A0G2JN53 185 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZCWPW2A0A1B0GU75 182 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MYOCOSA0A1B0GUC4 107 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SMCO3A2RU48 225 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 BLOC1S5-TXNDC5H3BN57 136 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 H7C417 338 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PPP1R2P9O14990 202 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 NKX2-8O15522 239 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PDE6DO43924 150 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TIMM8AO60220 97 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ICOSLGO75144 302 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CBX6O95503 412 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 GPR75O95800 540 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 BMP7P18075 431 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 DUSP1P28562 367 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 EPHA3P29320 983 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 HSD17B3P37058 310 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB7AP51149 207 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CLCN3P51790 818 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ACVR1Q04771 509 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MXD1Q05195 221 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 UBE2V1Q13404 147 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 RFTN2Q52LD8 501 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 NKAPLQ5M9Q1 402 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 KIAA0895LQ68EN5 471 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 KCNIP4Q6PIL6 250 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CXCL17Q6UXB2 119 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC29A4Q7RTT9 530 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF720Q7Z2F6 126 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 HSD17B13Q7Z5P4 300 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 GPR135Q8IZ08 494 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 C8orf59Q8N0T1 100 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SYS1Q8N2H4 156 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ACBD7Q8N6N7 88 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 CSNK1A1LQ8N752 337 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 OR6N1Q8NGY5 312 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 OR51F2Q8NH61 342 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM110DQ8TAY7 271 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB2BQ8WUD1 216 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PTPMT1Q8WUK0 201 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SUSD6Q92537 303 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms